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A place to dump relevant literature and possibly summaries too.
Tags in the format `[tag_name]` are added below each paper to allow for searching for specific topic.
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@pkay47
Step 1 - Can you find out if data (Glycosylation, phosphorylation) from PRIDE or similar mass spec databases makes it into UniProt and is later shared with GlyGen? Can you look into it and p…
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When using your Pyro models of SARS-CoV-2 variants--pyro-cov，I have made some problems, and desperately hope this issue will be resolved.
>make preprocess
My program is cloned by github website on…
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I trained nanoGPT for 200,000 epochs on a ~5gb dataset of COVID-19 research papers (from here):
https://allenai.org/data/cord-19
I am running 'MPS' on an Intel 2021 iMac 27" with an AMD Radeon P…
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Hi,
Do you provide any resource for the list of mutational changes per clade?
In the dataset that is acquired with Nextclade CLI, `nextstrain/sars-cov-2/wuhan-hu-1`, there is this statement in R…
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Title: Coagulopathy and Antiphospholipid Antibodies in Patients with Covid-19
# General Information
## Please paste a link to the paper or a citation here:
Link: http://www.nejm.org/doi/10.…
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I've noticed that when I load sequences from open covSpectrum into Nextclade using the URL params feature of Nextclade, all sequences are downloaded twice and aligned twice.
I checked whether it's …
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The SARS-CoV-2 site in particular has a lot of these.
For example: `/genomics/no-more-business-as-usual/3-MRCA/` has several links to `acc_date.csv` and `MRCA_Estimation_Notebook.ipynb` (under the …
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Hi folks,
I'd love to know about the current rough timeline for the next SARS-CoV-2 dataset release, if that is possible?
Thank you so much for this!
Ben
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I amplified SARS-CoV-2 positive samples with the ARTIC scheme V3.
Additionally I amplified three longer amplicons (2.5 kb) to cover regions of low coverage with the ARTIC scheme.
I tried to create …