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Hi,
recent commits broke the OpenMS converter. It has to do with making the conditions a semicolon-separated list and only putting the first element to the OpenMS experimental design.
E.g. for PXD…
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### Description of the problem:
The conversion seem to never complete after clicking on `Process` on the web interface .
![hca-to-scea-tool_Screenshot](https://user-images.githubusercontent.c…
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Annotations that are giving error while generating mqpar file;
PXD002171
PXD013765
PXD000561
Couple of screen shots of error messages:
For PXD000561, the error was in the version of UNIMO…
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The export to OpenMS with technical replicates is wrongly handled.
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Hi @shabai517:
- [ ] the project https://www.ebi.ac.uk/pride/archive/projects/PXD019394 has and SDRF and is not showing the table of the Experimental design.
- [ ] Also I found that you are qu…
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I have encountered minor issues with some files:
- [ ] PXD007555 -> comment[xxx mass tolerance] => written as 5ppm, without a space between value and unit so more complicated to parse
- [ ] PXD0…
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I tried to run a validation, but got an error on reaching an `ebi.ac.uk` server:
```bash
> parse_sdrf validate-sdrf --sdrf_file .\annotated-projects\PXD011839\sdrf.tsv
Traceback (most recent call…
enryH updated
3 years ago
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When using the conda version 0.05, then the openms folder seems to lack the _unimod.xml file_, resulting in an error when running `parse_sdrf convert-openms`
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There is a currently open PR #321, which annotates a sample spiked with a single protein (as far as I understand) analogous to already annotated [PXD001819](https://github.com/bigbio/proteomics-metada…