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ebi-ait
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hca-to-scea-tools
Helpers and tools to assist in the conversion of HCA datasets into SCEA
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Check species eligibility #86
#103
ami-day
closed
2 years ago
0
Check hca2scea works with multiple samples from same donor
#102
ami-day
closed
2 years ago
1
Fixed issues in code associated with failure of positive test cases
#101
ami-day
closed
2 years ago
0
Removed output of old positive test cases, not in use.
#100
ami-day
closed
2 years ago
0
Removed positive tests - will create a separate branch for the positi…
#99
ami-day
closed
2 years ago
1
Add positive test cases to characteristic test
#98
ami-day
closed
2 years ago
1
Refactor main hca2scea code
#97
ami-day
closed
2 years ago
1
Changed names of test files to reflect the functionality they test.
#96
ami-day
closed
2 years ago
0
Check experimental design #90
#95
ami-day
closed
2 years ago
0
Check for missing linking #91
#94
ami-day
closed
2 years ago
1
Enable complex experiment design #92
#93
ami-day
closed
2 years ago
1
Hca_to_scea: Fix protocol linking for complex experiment designs
#92
ami-day
closed
2 years ago
1
Hca_to_scea test: check for missing linking
#91
ami-day
closed
2 years ago
1
Hca_to_scea test: check experimental design
#90
ami-day
closed
2 years ago
1
Check for pooled biomaterials #88
#89
ami-day
closed
2 years ago
0
Hca_to_scea test: check for pooled biomaterials
#88
ami-day
closed
2 years ago
1
Check species eligibility #86
#87
ami-day
closed
2 years ago
0
Hca_to_scea test: eligibility of species
#86
ami-day
closed
2 years ago
0
Check technology eligibility #84
#85
ami-day
closed
2 years ago
0
Hca_to_scea test: eligibility of technology types
#84
ami-day
closed
2 years ago
1
Add additional Test Cases
#83
ami-day
closed
2 years ago
2
Fixed duplication of investigation title in the output idf file.
#82
ami-day
closed
2 years ago
0
Check for floating point number and reformat it.
#81
ami-day
closed
2 years ago
2
Duplicated Investigation title in idf file
#80
ami-day
closed
2 years ago
1
Correct floating point error
#79
ami-day
closed
2 years ago
1
dcp-69 create pypi package 2
#78
ami-day
opened
2 years ago
0
dcp-151 change output file type for ui integration
#77
ami-day
closed
2 years ago
0
dcp-68 split metadata by technology type
#76
ami-day
closed
2 years ago
1
Enhancement: add enrichment markers to immunophenotype column in sdrf
#75
ami-day
closed
2 years ago
1
Enhancement: add Fluidigm as technology type
#74
ami-day
closed
2 years ago
2
Enhancement: get secondary accessions from ingest
#73
ami-day
opened
2 years ago
1
Feature 69 Create pypi package
#72
ami-day
closed
2 years ago
2
Enhancement: Pooled samples
#71
ami-day
closed
2 years ago
1
Enhancement: organoid datasets
#70
ami-day
closed
2 years ago
1
Create PyPi package for hca-to-scea tool
#69
ami-day
closed
2 years ago
13
Bug/Enhancement: does not support more than 1 10X version in the same dataset
#68
ami-day
closed
2 years ago
2
Bug: does not support protocol type arrays of different lengths
#67
ami-day
closed
2 years ago
1
Bug: does not support datasets with multiples runs/lanes linked to a single cell suspension
#66
ami-day
closed
2 years ago
1
New feature: add publication info to idf file
#65
ami-day
closed
2 years ago
0
New feature: automatically add publication information
#64
ami-day
closed
2 years ago
0
Bump ajv from 6.12.0 to 6.12.6 in /hca2scea-frontend
#63
dependabot[bot]
opened
2 years ago
1
Bump node-sass from 4.13.1 to 7.0.0 in /hca2scea-frontend
#62
dependabot[bot]
opened
2 years ago
1
Feature/resolve sra file duplications
#61
ami-day
closed
2 years ago
0
SRA Object file paths are duplicated in the output sdrf file
#60
ami-day
closed
2 years ago
3
Feature/hcatoscea_test_data_ami_update
#59
ami-day
closed
2 years ago
4
dcp-593 add test data
#58
amnonkhen
opened
2 years ago
0
Feature: get sra object from ena. dcp-513
#57
ami-day
closed
2 years ago
0
Installation of hca2scea tool on EC2
#56
ami-day
closed
3 years ago
1
Add new deployment workflow
#55
jacobwindsor
opened
3 years ago
0
Update to hca2scea tool: automatically obtain fastq file paths or SRA file paths
#54
ami-day
closed
3 years ago
2
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