-
Hi,
I have a question regarding the -e/--mate parameter for the extract command.
Sometimes sequencing library is either non-strand-specific or single-end sequencing. According to the documentati…
-
It seems that the sequencing depth was not considered in the .py code. The sequencing depth could affect alpha and beta diversity. Should the sequencing depth be considered?
-
Related to Aerie QS ticket https://jira.jpl.nasa.gov/browse/AERIEQS-395, which has been marked as resolved. However, as of 1.0.2, this bug is not fixed. The following is mostly c/p'd from the QS ticke…
biqua updated
3 months ago
-
Hi team
Could you please let me know if this fasta file (screenshot below) work fine for dada2 pipeline to be used instead of silva 1.38? DO you think that is compatible with `assignTaxonomy()`. T…
-
Hello,
I have also been researching the GSE139136 scATAC-seq data recently. However, after downloading the files from SRA and running fastq-dump, I only obtained the paired-end sequencing files SRR…
-
In ARGs-OAP V3.2, each sample produces paired-end files corresponding to two results of ARGs abundance. I wonder if the abundance of ARGs from each sample is the sum of the abundances of the paired-en…
-
From EC:
In NDCS 1020 there is this note: "The correct sequence should be as follows: from 5925g to 5925xb after 5925t."
This would mean that AFRS TIJ 09 comes before TIJ 14.
-
Hi,
We have sequenced data (from Ion Torrent) for Low-pass shotgun sequencing. Is shotgun sequencing data compatibility to run ichorCNA to estimate the tumor fractionas as well as copy number identif…
-
Hello, I am trying to generate the input for SIGNALS using hmmcopy and counthaps; we have single-end data and we have realized that our data doesn't work with your software, specifically for the count…
shngk updated
6 months ago
-
### Requested Feature
This scenario already works, I’m just sharing it.
I have Spotify on iOS and a Pi4 Ubuntu server running at home. The router hosts a wireguard vpn and the server has fail2ban,…