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Hello,
Here is a demand from the Kinderspital Zurich:
"We have a patient with a PBX1-associated malformation syndrome: CAKUTHED (Congenital anomalies of kidney and urinary tract syndrome with or…
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Hi!
I 've recently used SciClone for a sample pair of primary and relapse. In the output table, the are some NA values which, as far as I know, correspond to mutations that are not shared between s…
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Hi
I'd like to signal our concern with the cookie deprecation ramp-up being planned to only take 2 months, according to the timeline at https://privacysandbox.com/open-web/#the-privacy-sandbox-time…
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First off, this library is very cool @smmaurer thanks for doing this!
Has anyone else noticed that orca_test is pretty slow? I mean, our simulation is about 73 minutes and when I added the UAL cod…
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After running both "singleMethAnalysisToBed" and "diffMethAnalysisToBed", it gives me output files listing only results for chr1.
I tried specifying as minchr 1 and maxchr 22 (even if it's the defaul…
Lux91 updated
6 years ago
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Hello, and thank you for your tool!
I am able to run CNSignatures with default signatures for a dataset of 74 ultra low-pass WGS (albeit only when I change the distribution from Gaussian to Poisson…
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_this is a course draft, no dates are fixed yet but this will change soon, comments are welcome_
## Do-Not-Repeat-Yourself
In this 3 parts hacky hours we will learn how to get from raw data to inform…
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Hi,
Congrats on your recent pre-prints on targeted Nanoseq. We saw it described an unbiased BAM VAF. Is this calculated by the Nanoseq pipeline?
If not, do you all calculate it specifically from t…
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https://github.com/cancerit/dockstore-cgpwgs/blob/develop/examples/cgpwgs/bam_bai.json is missing references to a .bas file
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The log likelihood reported can sometimes be largely negative. My data are quite sparse TGS data, so I use a low min.het and cval. Facets complains about data quality, however the outputs are quite of…