hdng clonevol issues - Githubissues

hdng / clonevol

Inferring and visualizing clonal evolution in multi-sample cancer sequencing

GNU General Public License v3.0

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Example trees.tsv and variants.tsv files

#59 aklein-705 opened 1 year ago
0
driver annotations on fishplot

#58 mdiaz09 opened 1 year ago
0
error in convert.consensus.tree.clone.to.branch

#57 jsha129 opened 1 year ago
3
No consensus multi-sample models provided.

#56 pushpa-itagi opened 1 year ago
0
Questions about data input

#55 xiw588 opened 1 year ago
0
could not find "'tree.tsv' and 'variants.tsv' these two files

#54 alextwc opened 2 years ago
0
build_tree/infer.clonal.models unused argument error

#53 nfarnoud opened 2 years ago
0
Error in merge.clone.trees

#52 kxxxjo opened 2 years ago
2
infer.clonal.models() no rows to aggregate

#51 Aaron-sqw opened 2 years ago
2
Data visualization when inferring a polyclonal model

#50 Psrwnsr opened 2 years ago
0
cancer.initiation.model parameter in infer.clonal.models()

#49 LucasLiu20200131 opened 3 years ago
1
Error in Generating consensus clonal evolution trees across samples

#48 qindan2008 opened 3 years ago
1
PyClone-vi output

#47 DrBlanco-Heredia opened 3 years ago
1
[Help..] Found 0 consensus model(s)

#46 biosurgeon opened 3 years ago
2
variants from primary tumors and metastasis tumors without normal controls

#45 qindan2008 opened 3 years ago
0
to repeat the example in the ClonEvol Tutorial by RGui4.0.2

#44 nypeterju opened 3 years ago
0
Update boxplot.r

#43 RupalHatkar opened 3 years ago
0
estimate.clone.vaf

#42 DrBlanco-Heredia opened 3 years ago
1
plot.all.trees.clone.as.branch -bug with branches name

#41 qingjian1991 opened 3 years ago
2
infer.clonal.models - bug with alternate cluster column names

#40 iryxie opened 4 years ago
0
Can I still use clonevol on my data

#39 MaryGoAround opened 4 years ago
4
Patients with only one sample

#38 logan-leak opened 4 years ago
2
Issue infer.clonal.models function

#37 tomasellimichelle closed 4 years ago
3
ERROR: No clonal models for sample, if founding.cluster = NULL

#36 SoloveyMaria opened 4 years ago
1
combined p calculation number of rows do not agree

#35 teng-gao opened 4 years ago
0
adding post.sample.col

#34 teng-gao opened 4 years ago
0
Error in infer.clonal.models: No clonal models for sample

#33 hoonghim opened 4 years ago
5
Error in plot.clonal.models

#32 fjgassner opened 4 years ago
1
what if you do not have driver event and gene information?

#31 owyl2 opened 4 years ago
1
Interpretations of results from infer.clonal.model

#30 huiyao25 opened 5 years ago
0
error input from ClonEvol for fishplot

#29 Tinalxt opened 5 years ago
1
question: specifying time-points & working with low VAFs

#28 paularstrpo closed 5 years ago
6
question about enumerating clonal architectures

#27 sszhang72 closed 5 years ago
1
errors in plotting the tree (again...)

#26 jungminchoilab closed 5 years ago
1
cluster.counts

#25 amanda-fitz opened 5 years ago
4
Question about node label

#24 d88020 closed 5 years ago
1
How to use option ignore.clusters in infer.clonal.models

#23 xiongssg closed 6 years ago
12
questions on the tree

#22 jial2 closed 6 years ago
3
Pyclone, cellular_prevalence, variant_allele_frequency

#21 zorrodong closed 6 years ago
5
Input file from PhyloWGS

#20 mauroraptor86 closed 6 years ago
1
Error in infer.clonal.models function

#19 vale86ita opened 6 years ago
4
Errors while plotting the tree

#18 jungminchoilab closed 6 years ago
3
Error: 'createFishPlotObjects' is not an exported object from 'namespace:clonevol'

#17 crazyhottommy closed 6 years ago
6
Monoclonal Fishplot Failure

#16 RaphaelHablesreiter closed 4 years ago
4
CCF values in AML1 dataset

#15 andhena closed 6 years ago
2
`show_guide` has been deprecated. Please use `show.legend` instead.

#14 DawnMKing opened 6 years ago
2
ERROR: No clonal models for sample using clonevol

#13 gyfangel closed 6 years ago
1
ERROR: No clonal models for sample

#12 gyfangel closed 6 years ago
14
error while running infer.clonal.models()

#11 gunjangala closed 6 years ago
3
tree plot error2

#10 xtmgah closed 6 years ago
5