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Hello,
I have been running PCGR (v1.4.1, GRCh37) on some clinical samples. These were just tests, so I didn't use proper pipelining workflows. I just used ```xargs``` to run samples in parallel :…
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Hi,
thank you for your super-interesting tool.
I have some questions about the snakemake_config.yaml (If I plan to run all pipeline together using snakemake)
1. This file has to stay in the IRI…
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Hi,
I have a dataset of NSCLC tumors that have both been whole-exome sequenced and RNA-sequenced. I have some more samples for which I only have DNA so I wanted to use ExTRECT to predict the T cell…
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```
URL of the application, including the query parameters that specify the
filter:http://explorer.cancerregulome.org/all_pairs/?dataset=kirc_01oct12_A_pw&t
_label=aldh4a1
Using KIRC data set with tu…
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Hi, I found the TypeError while run train.py. the detail is as follows:
> Traceback (most recent call last):
> File "train.py", line 108, in
> brain_seg = Training(batch_size=4,nb_epoch=3,…
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Hi,
I am wondering if it's possible to run tumor/normal pair with a simple lumpyexpress command line:
lumpyexpress -B tumor.bam,normal.bam -o tumor-normal.vcf -x btu356_LCR-hs38.bed. So that the spl…
arkyl updated
6 years ago
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```
URL of the application, including the query parameters that specify the
filter:http://explorer.cancerregulome.org/all_pairs/?dataset=kirc_01oct12_A_pw&t
_label=aldh4a1
Using KIRC data set with tu…
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Hello,
I am looking at cancer in canines and felines, and I run into the issue:
Error in keepSeqlevels(seqinfo, value = chrs) :
invalid seqlevels: 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33,…
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Hello,are you using the via tool to mark comments that manually label the images in the t1ce folder?
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### Team Name:
Falcon
### Project Description:
In this Qhack challenge, we propose use of QML for recognition and classification tumorous and normal brain tissue. The proposed Variational Qua…