issues
search
sigven
/
pcgr
Personal Cancer Genome Reporter (PCGR)
https://sigven.github.io/pcgr
MIT License
247
stars
47
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Conda: deprecate OSX lockfile
#248
pdiakumis
opened
1 week ago
0
Docker: move to GitHub Container Registry
#247
pdiakumis
opened
1 week ago
0
run PCGR as non-root user fails at quarto
#246
HomoPolyethylen
closed
1 week ago
4
Ensure proper exclusion of variants on non-nuclear chromosomes/scaffolds in pcgrr
#245
sigven
closed
2 weeks ago
0
Issues installing pcgrr in PCGR v2.0.0
#244
cornejoem
closed
2 weeks ago
11
Documentation update
#243
pdiakumis
closed
3 weeks ago
0
Set locale to avoid apptainer warnings on HPC
#242
pdiakumis
closed
1 month ago
0
Data bundle update error
#241
xgnusr
closed
3 weeks ago
2
Refactor installation docs
#240
pdiakumis
closed
1 month ago
0
Revert "Restructure installation doc"
#239
pdiakumis
closed
1 month ago
0
Restructure installation doc
#238
pdiakumis
closed
1 month ago
0
Use local favicon and remove system calls
#237
pdiakumis
closed
1 month ago
0
Fix for "SyntaxWarning: invalid escape sequence"
#236
pdiakumis
closed
1 month ago
0
Docker: use multi-stage build
#235
pdiakumis
closed
1 month ago
0
Docker: decrease image size
#234
pdiakumis
closed
3 weeks ago
0
Bump VEP to 112
#233
pdiakumis
closed
1 month ago
0
Quarto fixes
#232
pdiakumis
closed
1 month ago
0
Add randomForest dependency
#231
pdiakumis
closed
1 month ago
0
Singularity/Apptainer support
#230
pdiakumis
closed
1 month ago
0
Various last-minute fixes
#229
pdiakumis
closed
1 month ago
0
Update conda recipe
#228
pdiakumis
closed
1 month ago
0
Bump r-base to 4.3.3
#227
pdiakumis
closed
1 month ago
0
conda: install openxlsx2 + CNAqc during build stage
#226
pdiakumis
closed
2 months ago
0
Changes from devtools::check
#225
pdiakumis
closed
2 months ago
1
Extend sample ID length limits
#224
MareikeJaniak
closed
1 month ago
5
PCGR v.2.0rc - 2024
#223
sigven
closed
3 weeks ago
1
move to pyproject.toml python pkg setup
#222
sigven
closed
5 months ago
0
Update to Ensembl v111
#221
sigven
closed
5 months ago
0
Conda update
#220
pdiakumis
closed
7 months ago
1
Regarding CNV analysis on germline VCF
#219
AidanGCr
closed
8 months ago
4
Sif image
#218
AidanGCr
closed
9 months ago
2
use NROW in biomarkers
#217
sigven
closed
1 year ago
0
missing codon biomarkers (data and detection)
#216
sigven
closed
1 year ago
0
report dual role TSG/ONCs for ONC gains
#215
sigven
closed
1 year ago
0
Parallel instances
#214
gitMakeCoffee
opened
1 year ago
4
conda installation issue with ncurses too many levels of symbolic links
#213
pdiakumis
closed
3 weeks ago
0
update changelog with v1.4.0 changes
#212
pdiakumis
closed
1 year ago
0
Use biocondarised vcf2tsvpy
#211
pdiakumis
closed
1 year ago
1
skip favicon for Rmarkdown
#210
sigven
closed
1 year ago
0
Update report style
#209
sigven
closed
1 year ago
0
Better handling of pcgr/pcgrr conda env custom naming
#208
pdiakumis
closed
1 year ago
1
Use VEP vcf as input to vcf2maf.pl
#207
sigven
closed
1 year ago
0
Pick trans consequence patch
#206
sigven
closed
1 year ago
0
pcgr-summarise: AttributeError: 'dict' object has no attribute 'INFO'
#205
pdiakumis
closed
1 year ago
3
Unable to find some VEP generated predictions
#204
dattatraymongad
closed
1 year ago
4
Most columns are empty within MAF
#203
weichisyu
opened
1 year ago
3
expand Clinical biomarkers
#202
user-tq
closed
3 weeks ago
3
proritize protein-coding BIOTYPE csq
#201
sigven
closed
1 year ago
0
Small fixes
#200
pdiakumis
closed
1 year ago
0
Use bcftools for initial VCF parsing
#199
pdiakumis
closed
1 year ago
0
Next