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Hello guys,
your tool is such a great tool. I would like to ask one question: I have applied `IKAP` on a Seurat object that was fully processed and filtered. what I mean by `filtered` is that I remov…
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When I run demuxlet, I get the following:
SNG.POSTERIOR is always equal to 1 (even with DROPLET.TYPE==DBL)
BEST.POSTERIOR is always a negative number
From reading other github issues, it looks …
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Hi,
I saw on github that you doublet the code of the original author of plenoxels. And see you want to optimize depth. This is relevant to my research.In svox2.py file,define a volume_render_depth fu…
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@xiaoyeye great tool! when I run analysis get error like this.
The adata file is a subset of a big file and then merge with the velocyto file.
```
(TFvelo_env) dengzhen@dengzhen-Super-Server:~/co…
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### Background
Earlier last year, a [bio-transformation experiment ](https://github.com/OpenSourceMalaria/OSM_To_Do_List/issues/513)created a product which exhibited a potency of
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Hi @huangyh09,
Thank you for creating vireo & cellsnp-lite - it is my to go software for demultiplexing!!
We have multiomic sequencing (shallow)
1. for scRNA 3320 mean raw reads per cell
2…
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Hello,
Thank you for creating this useful package (and also the genotyping package, cellsnp-lite) that has been critical to my work in bone marrow transplant research.
I have ran the vireo packa…
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Hi there,
Thanks for a great tool!
Can I use this tool to predict the data of scATAC?
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I have installed the tool and while running it,the following error was prompted:
Traceback (most recent call last):
File "./ptf.py", line 8, in
from core.excute import main
File "/opt/Pen…
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occasional failure:
```
=== prop_success_array_of_struct_input from test/Icicle/Test/Sea/Psv.hs:87 ===
*** Failed! Exception: 'IMPOSSIBLE: unsafeSubstExp name being shadowed, cannot perform subst…