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Hello,
Thanks so much for developing this tool, I find it quite easy to use.
I'm wondering what's causing duplicated transcripts (identical coordinates, different transcript id) to have differen…
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List of remaining issues (also see https://centrepopgen.slack.com/archives/C018KFBCR1C/p1661145055698219?thread_ts=1658208231.938539&cid=C018KFBCR1C):
- [x] Drop alleles column
- [x] Merge `run_only…
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I'm having troubles with ensDbFromGff for some gff3 files downloaded from Ensembl ftp. For example, Danio rerio in Ensembl versions 94, 95, and 96 (but not Ensembl versions 93, 92, 91, 90, or 85), usi…
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The strategy that I've implemented is to map single cell data vectors to elements of a platform using various IDs with some predefined precedence:
- composite sequence name
- NCBI IDs
- Ensembl ID…
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Similar to the work on variant index (#3350), we would like to serve a `gwas_study_index` dataset through OS + API.
This dataset is created by different upstream ETL processes ([gentropy](https://g…
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From gwas-info:
"I downloaded the catalog data from your website (gwas-association-downloaded_2022-05-19-EFO_0000729.tsv) and unfortunately recognised, that all occurrences of the gene name Y_RNA are…
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Hi all!
First of all thanks for the amazing work on IRFinder.
I have identified and classified the differential IR events using IRFinder via GLM based on the criteria "|IR.change|>0.5" and "pvalue
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Our current sequence feature #19 proposal refers to identifiers (`id`) however example payloads describe these as a single field without a version. This issue is here to collate examples of the use of…
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Dear developer, I'm sorry to disturb you！
When I use the gtftk count function, there are some errors：
This is the GTF file link I am using（https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/019/924/925/GC…
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https://mp.weixin.qq.com/s/876tFctpemrP0HrkRJlC6g