-
It is difficult to select multiple items in a Window environment. Holding the Shift key highlights other rows or highlights the header. A selection can only be done one item at the time.
![image](ht…
-
note the unspecified genome/no seqlengths at the end
```
> gbmMAE
A MultiAssayExperiment object of 4 listed
experiments with user-defined names and respective classes.
Containing an Experiment…
-
## Problem summary
When specifying a specific `mm_x` and `tile_size` in the `tileIterator`, there's some up- and down-scaling happening leading to floating-point numbers, which are rounded in interme…
-
--- data hookup to API to Import MAF File:
When user clicks "Import MAF from GDC"
- [x] either it works, and the Research Somatic Variants are loaded in the table. Importing message will show if…
-
**Overview**
Data Format - TXT
Data Category - Copy Number Variation
Data Type - Gene Level Copy Number
Example File ID - b8b369b0-1e63-485c-a711-0211823834fe
**Notes**
Add a SeqFeature for Ge…
-
#### What analysis module should be updated and why?
`snv-callers`, and in particular the generation of the consensus MAF file.
#### What changes need to be made? Please provide enough detai…
-
### Cancer resources
* TCGA: https://portal.gdc.cancer.gov/
* TCGA barcode: https://docs.gdc.cancer.gov/Encyclopedia/pages/TCGA_Barcode/
* TCGA metadata: https://docs.cancergenomicscloud.org/docs/t…
-
I have two issues to ask about which are not completely independent.
I am currently using the new version of snpEff (4.xx) which has new annotations. I have been putting them in manually but I am hav…
-
This is follow up on https://github.com/ImagingDataCommons/IDC-WebApp/issues/230#issuecomment-682060625.
Suggestion is to pick all icons that show up on the top of the front page from the same icon…
-
From https://app.zenhub.com/workspaces/dcp-5ac7bcf9465cb172b77760d9/issues/humancellatlas/dcp/34:
As a user of the DCP, I will approach it and it's vast amounts of data and, after searching for the d…