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Dear developers,
Following a brief discussion on Twitter, I will here present some stats from comparing **Bonito 0.3.2** against **Guppy 4.2.2** (HAC and Fast) basecalls using an Nvidia RTX 3090 on…
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- [x] Download the Genome from NCBI
GCF_000767585.1_PRJNA234474_Ca_dromedarius_V1.0_genomic.fna.gz`
### LTR-Detection
- [x] **Create index** _find pairs of maximal exact direct repeats that a…
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I'm writing code to verify the benchmark's results are the same for three tools and found this problem.
The allele frequency is run on chromosome 21, which has 1105538 variants. I found Sgkit and H…
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This is something that tripped me up when I was getting started with BURST. BURST seems to let you build a database + accelerator from a gzipped Fasta file without an error, but the result is non-func…
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Hi Yunfei,
Here is an error I met during running SeqMule.
The SeqMule command is:
seqmule pipeline -a r1.fastq.gz -b r2.fastq.gz -advanced ./predefined_config/snap_freebayes.config -quick -t …
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Hey,
I have been following the annotation steps mentioned at [https://funannotate.readthedocs.io/en/latest/tutorials.html#genome-assembly-and-rna-seq](url).
I have completed the following with no…
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> parse
@mhemberg
Hai did you get restults by running these comments
"singularity exec docker://dfam/tetools:latest BuildDatabase -name sequence_index -engine ncbi sequence.fa…
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Hello again ;_;
I ran into another issue
Thanks in advance!
**Are you using the latest release?**
v1.8.8
**Describe the bug**
A little unsure about this
output error:
```
ERROR: G…
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Dear PathoScope developers, @kacrandall @ecastron @mlbendall @rgranit,
first of all I would like to thank you for developing and maintaining Pathoscope but also offering a tutorial explaining this …
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Greetings,
I'm running into an error when chunking the reference. Here is my command
```
singularity exec /data/containers/glimpse_v2.0.0-27-g0919952_20221207.sif GLIMPSE2_split_reference \
--re…