odelaneau GLIMPSE issues

odelaneau / GLIMPSE

Low Coverage Calling of Genotypes

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issues

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GLIMPSE2_phase using more CPU than expected

#245 alshai opened 1 day ago
0
boost incompatibility with v2.0.1

#244 baihesun opened 1 week ago
0
phase: models: use signed char instead of char

#243 rwk-unil opened 1 week ago
0
The use of "char" to hold signed values can lead to unexpected behaviour

#242 rwk-unil opened 2 weeks ago
1
phase: caller: Print caller options correctly

#241 rwk-unil closed 2 weeks ago
0
Phase: Genotype calling options not shown correctly

#240 rwk-unil closed 2 weeks ago
0
tutorial: step5 change output from .vcf.gz to .bcf

#239 rwk-unil closed 2 weeks ago
0
Tutorial step5 outputs .vcf.gz, step6 expects .bcf

#238 rwk-unil closed 2 weeks ago
0
Replace AVX2/FMA with SIMDe (SIMD everywhere)

#237 rwk-unil opened 2 weeks ago
0
Bump webrick from 1.7.0 to 1.8.2 in /docs

#236 dependabot[bot] closed 2 weeks ago
0
Ask about header of `*rsquare.grp.txt.gz`, output of GLIMPSE2 concordance

#235 Truongphikt opened 4 weeks ago
1
Bump rexml from 3.3.3 to 3.3.9 in /docs

#234 dependabot[bot] closed 2 weeks ago
0
GLIMPSE2_split_reference_static does not work

#233 cautree closed 2 weeks ago
2
--max-depth request

#232 Ahhgust opened 1 month ago
0
Chromosome X imputation accuracy in males

#231 luciamayorf closed 2 months ago
0
GLIMPSE2_chunk ERROR: No variant found in region.

#230 itaibeno closed 2 weeks ago
2
Bump rexml from 3.3.3 to 3.3.6 in /docs

#229 dependabot[bot] closed 4 weeks ago
1
Glimpse2 phasing returning sites from ref not in sample file

#228 drneavin opened 3 months ago
0
Glimpse2_phase (2.0.0) segfault - but only with large number of variants in reference panel.

#227 bgulko opened 3 months ago
0
accuracy of imputed genotypes

#226 felassadi opened 3 months ago
0
GLIMPSE_phase (v1.1.1) segfault during finalization

#225 TedBrookings opened 3 months ago
1
Bump rexml from 3.2.8 to 3.3.3 in /docs

#224 dependabot[bot] closed 3 months ago
0
Phasing with larger chunks?

#223 drneavin closed 2 weeks ago
5
GLIMPSE2_phase Error while loading regions

#222 ian15brown closed 4 months ago
1
guidance for using targeted sequencing

#221 jaredo-az closed 3 months ago
1
Floating point exception (core dumped) when run GLIMPSE2_phase

#220 dangcaptkd2 opened 4 months ago
2
Questions about multiple samples imputation by GLIMPSE2

#219 raksasa closed 2 weeks ago
3
How to imputate chrX using GLIMPSE2

#218 raksasa opened 4 months ago
1
ESC[31mERROR: ESC[0mStates for individual 0 are zero. Error during selection.

#217 NahlaHu opened 5 months ago
0
Bump braces from 3.0.2 to 3.0.3 in /docs

#216 dependabot[bot] closed 3 months ago
0
ERROR compiling GLIMPSE2 static execution

#215 leedchou closed 5 months ago
0
ERROR compiling GLIMPSE2 static execution

#214 leedchou closed 5 months ago
2
Bump rexml from 3.2.5 to 3.2.8 in /docs

#213 dependabot[bot] closed 6 months ago
0
Add retries in case of network errors, and check for sam read errors during pileup calling

#212 kachulis closed 6 months ago
1
ERROR: Overlap between buffer-specific variants

#211 drneavin opened 6 months ago
1
Glimpse concordance gzip output

#210 LouisLeNezet closed 4 months ago
1
"High Proportion of SNPs with MAF of 0 in Imputed Low-Coverage Samples: Normal or Indicative of Issues?"

#209 waitingwaitinghu opened 7 months ago
1
Specify index associated with BAM/CRAM file

#208 kachulis closed 7 months ago
1
Information regarding GLIMPSE2_split_reference

#207 dev3105 opened 7 months ago
0
Buffer bug???

#206 leedchou opened 8 months ago
2
Question Regarding the Use of GLIMPSE2 for Imputation

#205 Taewoong-Ha opened 8 months ago
0
Priority of chunk parameters

#204 leedchou opened 8 months ago
2
Issue in compiling GLIMPSE2

#203 dev3105 opened 8 months ago
1
Getting smaller chunk size

#202 ssinh10 closed 7 months ago
3
Imputing Indels in low coverage WGS

#201 sumudu-rangika opened 8 months ago
0
Support for GRCh37 version

#200 ssinh10 closed 9 months ago
7
Are imputed individuals included back into the reference panel?

#199 sahwa closed 9 months ago
1
[31mERROR: [0mERROR base sequences.

#198 Xinyi2796 closed 9 months ago
1
GLIMPSE_concordance: No set of files detected in .lst

#197 chvbs2000 closed 2 weeks ago
1
GLIMPSE2_ligate: Three files overlapping at position

#196 Truongphikt opened 10 months ago
9