odelaneau GLIMPSE issues

odelaneau / GLIMPSE

Low Coverage Calling of Genotypes

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issues

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Chromosome X imputation accuracy in males

#231 luciamayorf closed 1 week ago
0
GLIMPSE2_chunk ERROR: No variant found in region.

#230 itaibeno opened 1 month ago
1
Bump rexml from 3.3.3 to 3.3.6 in /docs

#229 dependabot[bot] opened 1 month ago
0
Glimpse2 phasing returning sites from ref not in sample file

#228 drneavin opened 1 month ago
0
Glimpse2_phase (2.0.0) segfault - but only with large number of variants in reference panel.

#227 bgulko opened 1 month ago
0
accuracy of imputed genotypes

#226 felassadi opened 1 month ago
0
GLIMPSE_phase (v1.1.1) segfault during finalization

#225 TedBrookings opened 1 month ago
1
Bump rexml from 3.2.8 to 3.3.3 in /docs

#224 dependabot[bot] closed 1 month ago
0
Phasing with larger chunks?

#223 drneavin opened 2 months ago
5
GLIMPSE2_phase Error while loading regions

#222 ian15brown closed 2 months ago
1
guidance for using targeted sequencing

#221 jaredo-az closed 1 month ago
1
Floating point exception (core dumped) when run GLIMPSE2_phase

#220 dangcaptkd2 opened 2 months ago
2
Questions about multiple samples imputation by GLIMPSE2

#219 raksasa opened 2 months ago
2
How to imputate chrX using GLIMPSE2

#218 raksasa opened 2 months ago
1
ESC[31mERROR: ESC[0mStates for individual 0 are zero. Error during selection.

#217 NahlaHu opened 3 months ago
0
Bump braces from 3.0.2 to 3.0.3 in /docs

#216 dependabot[bot] closed 1 month ago
0
ERROR compiling GLIMPSE2 static execution

#215 leedchou closed 3 months ago
0
ERROR compiling GLIMPSE2 static execution

#214 leedchou closed 3 months ago
2
Bump rexml from 3.2.5 to 3.2.8 in /docs

#213 dependabot[bot] closed 4 months ago
0
Add retries in case of network errors, and check for sam read errors during pileup calling

#212 kachulis closed 4 months ago
1
ERROR: Overlap between buffer-specific variants

#211 drneavin opened 4 months ago
1
Glimpse concordance gzip output

#210 LouisLeNezet closed 2 months ago
1
"High Proportion of SNPs with MAF of 0 in Imputed Low-Coverage Samples: Normal or Indicative of Issues?"

#209 waitingwaitinghu opened 5 months ago
1
Specify index associated with BAM/CRAM file

#208 kachulis closed 5 months ago
1
Information regarding GLIMPSE2_split_reference

#207 dev3105 opened 6 months ago
0
Buffer bug???

#206 leedchou opened 6 months ago
2
Question Regarding the Use of GLIMPSE2 for Imputation

#205 Taewoong-Ha opened 6 months ago
0
Priority of chunk parameters

#204 leedchou opened 6 months ago
2
Issue in compiling GLIMPSE2

#203 dev3105 opened 6 months ago
1
Getting smaller chunk size

#202 ssinh10 closed 5 months ago
2
Imputing Indels in low coverage WGS

#201 sumudu-rangika opened 6 months ago
0
Support for GRCh37 version

#200 ssinh10 closed 7 months ago
7
Are imputed individuals included back into the reference panel?

#199 sahwa closed 7 months ago
1
[31mERROR: [0mERROR base sequences.

#198 Xinyi2796 closed 7 months ago
1
GLIMPSE_concordance: No set of files detected in .lst

#197 chvbs2000 opened 7 months ago
1
GLIMPSE2_ligate: Three files overlapping at position

#196 Truongphikt opened 8 months ago
5
discordance in GLIMPSEv1 output genotypes between the two genotyping approaches

#195 CjeicaM closed 8 months ago
1
Create referrence

#194 Sondr11 closed 8 months ago
2
Imputation rate

#193 acty2323 closed 7 months ago
4
GLIMPSE2 - NIPT

#192 Sondr11 closed 10 months ago
3
Measure for imputation accuracy

#191 sumudu-rangika opened 10 months ago
1
Fewer variants in the reference panel file downloaded from the GLIMPSE2 website

#190 acty2323 closed 9 months ago
2
GLIMPSE2_split_reference ERROR: AC/AN INFO fields in VCF are inconsistent with GT field, update the values in the VCF

#189 jpcartailler opened 11 months ago
7
Checkpointing

#188 kachulis closed 9 months ago
0
Questions about imputation

#187 acty2323 closed 10 months ago
1
Bump postcss from 8.4.25 to 8.4.31 in /docs

#186 dependabot[bot] closed 11 months ago
0
error in glimpse phase step

#185 felassadi closed 11 months ago
5
Glimpse concordance missing columns

#184 LouisLeNezet opened 1 year ago
1
GLIMPSE2 : Called variants handling in output imputed data

#183 bpprins closed 10 months ago
1
GLIMPSE1: ERROR: Parsing line 0 : incorrect number of columns, observed: 1 expected: 3

#182 whothis7 closed 1 year ago
2