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Hello! I'm using the container `docker pull quay.io/biocontainers/sourmash:2.0.0a7--py27_0` to run sourmash compute directly on `trim-low-abund.py` reads and am getting this strange error:
```zsh
…
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Hi, anybody would help me?
I have a problem with canu. I build a bash file, then I use "qsub" command to submit this task to our server. It always fails "Mhap overlap jobs failed, tried 2 times, givi…
KSL22 updated
6 years ago
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I am trying to run the squashed option in Canu. And when I get to the unitigging step, I get errors in 2 overlap jobs.
Canu script for job submission in PBSPro
```
#!/bin/bash
#PBS -P RDS-FAE-OS…
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I am trying to assemble a viral genome after correction of the Pacbio long sequences by Illumina short reads using LoRDEC. During the assembly, I have gotten an error such as 'Bogart failed'. Could yo…
tay45 updated
6 years ago
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HELLO:
I'm running canu-1.7.1 on PacBio Sequel data
the command is:
`~/canu-1.7.1/Linux-amd64/bin/canu -correct \-p peking -d peking-auto \corThreads=30 gnuplotTested=true \genomeSize=1200m minRead…
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Hi, anybody could help me?
I have a problem with canu. I build a bash file, then I use "qsub" command to submit this task to our server. It always fails. So I use "bash" command to run this file dir…
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After Canu was downloaded from https://github.com/marbl/canu.git and installed on Ubuntu-based desktop computer as instructed, I tried to check Canu program with test data from http://nanopore.s3.clim…
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Hello, I am currently trying to run canu with the ecoli test data.
Unfortunately, the run doesn't seem not going through properly. Even though I wrote the exact sampe example code, I found from the t…
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I've assembled the sequence step by step, and I have an issue at the second trim. error rate=0.039 command was successful complete. So, I don't know why this command couldn't run. Thank you
```
ca…
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I'm having trouble getting CANU to run. I'm working under Linux using
CANU v1.7 (binary distribution):
```
canu --version
Canu 1.7
```
The command I'm running is this:
```
/canu-1.7/Li…