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Hi,
I'm trying to use Racon to polish a genome using 10X data, i.e. effectively Illumina. Racon has been running for 5 days and 20 hours now with only this output in the log. Has Racon stalled, as …
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Hello, thank you for the development of LinkedSV. Trying out your software, I unfortunately came across this error:
`[11/12/2018 18:48:39 (56.603 MB)] finished extracting weird reads
[11/12/2018 18:…
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how is it possible to use barcoded reads from 10X data as inputs of minia
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Hi!
I would like to use Quast 5 in order to do some analysis by aligning 12 libraries of paired-end and mate pair reads. in a command like this:
``` ./quast.py -r ~/e/Planaria_10X/Fastq/For_10x_Deno…
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Hi,
I'm trying to use arcs pipeline and everything seems to run without error. But I got empty original.gv file. I followed a pipeline aim to Acropora millepora Genome Assembly (Zachary L. Fuller,…
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HI @warrenlr,
I'm trying to generate the right formatting for the fastq files. I've not found any example, so I tried to deduce it from the bam file `NA24143_genome_phased_namesorted.bam1.sorted.ba…
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Hello Alex
I was wondering if you can provide an example of a config.json file you used to run the assembler since it seems to be missing.
Thanks,
Andy
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I've just finished running groc-svs on a 30X coverage Chromium dataset, but it missed an SV that was called by longranger_wgs and has strong read support. Are there any parameters I can adjust when ru…
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[S1_ILLUMINA.merge.dedup.realign.recal.snpeff.stats.summary.txt](https://github.com/ewels/MultiQC/files/293944/S1_ILLUMINA.merge.dedup.realign.recal.snpeff.stats.summary.txt)
Hello Phil,
I am trying t…
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For transparency, here's my "design document"
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**Main requirements**
- [x] Nextflow? yes
- [x] Supernova running in `$SNIC_TMP` (Irma compatible?)
- [x] 1.20 compatible — multiple inp…