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This is a valuable project and should be followed up !
We will try to revive it and expand it to a general microbiome DB framework.
Could you please include detailed instructions on:
* How to ru…
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Characteristics and Correlations of the Oral and Gut Fungal Microbiome with Hypertension - Chen et al - Microbiol Spectr.
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9927468/
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Thanks for this interesting piece of work for microbiome analysis and interpretation.
Making the package available through CRAN (or Bioconductor). This could support the handling of dependencies an…
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Gut Microbiome Alterations following Postnatal Iron Supplementation Depend on Iron Form and Persist into Adulthood - McMillen et al - Nutrients
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8838803/
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Hi!
I am trying to run GOTTCHA on a CAMI dataset (toy human microbiome) and I keep receiving the following error.
$gottcha_new/bin/gottcha.pl --threads 11 --outdi…
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I have followed all the instruction mentioned in your `readme` installed all the necessary dependencies and added the DBSCAN_SWA in my `.bashrc ` and also added in terminal also using `export` option …
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BTW @antagomir I was wondering what would be the best way to maintain this website resource. This could also be linked to the suggestions from @TuomasBorman
https://github.com/microbiome/OMA/issues/3…
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Environmental science standards to support linking with microbiome data
While there are many existing challenges to fully leverage microbiome data for climate science (11), a
tangible, near-term chall…
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Briefly comment on this issue why you'd be interested in this project.
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Dear @yiluheihei ,
Thanks for your efforts. Is it expected to not find any marker when running the run_ancombc() example?
```
data(enterotypes_arumugam)
ps microbiomeMarker-class inherited fr…