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yiluheihei
/
microbiomeMarker
R package for microbiome biomarker discovery
https://yiluheihei.github.io/microbiomeMarker
GNU General Public License v3.0
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plot_claudogram() takes forever to complete
#119
bahyirou
opened
1 week ago
0
run_aldex enrich_group source code question
#118
possumhound
opened
1 month ago
0
Error in `purrr::map2_lgl()`: ! Can't recycle `.x` (size 45) to match `.y` (size 0).
#117
thngkaixian
opened
1 month ago
0
Error when trying to write as a CSV the marker_table
#116
mdtorohernando
opened
3 months ago
1
CLR Normalization does not automatically handle zero values
#115
qqwxp
opened
4 months ago
0
Error when running run_aldex with kruskal or glm_anova for more than 2 level comparisons
#114
LauGuaUuu
opened
5 months ago
5
error in plot_cladogram function "TRUE/FALSE needed"
#113
drelo
closed
3 months ago
1
microbiomeMarker installation
#112
fabio-marcelo
opened
7 months ago
0
lefse analysis error
#111
KOMALSKK
opened
7 months ago
0
Multiple errors when following tutorial using my own dataset
#110
lingvv
opened
7 months ago
0
function or argument to subset taxa for plot_cladogram
#109
ethanbass
opened
8 months ago
1
When run run_lefse, get different results at species level using taxa_rank default and taxa_rank="species" seperatly
#108
LAmethyst
opened
9 months ago
0
error with run_lefse with 1 group and one subgroup: Error in `purrr::map2_lgl()`: i In index: 1
#107
nadiaandreani
opened
9 months ago
0
otu_table from run_lefse differs from otu_table from phyloseq
#106
vdijckthomas
closed
11 months ago
1
DESeq2
#105
BlueK77
opened
11 months ago
1
is there a way to calculate AUC confidence interval while running run_sl
#104
nbutyrate
opened
11 months ago
0
a
#103
cafferychen777
opened
11 months ago
0
suggestion: PINA and TINA
#102
Luponsky
opened
1 year ago
0
Error in check_rank_names(ps) : ranks of taxonimic profile must be one of Kingdom, Phylum, Class, Order, Family, Genus, Species
#101
KatrinaLutap
opened
1 year ago
3
how to interpret the result of plot_abundance
#100
linux51
opened
1 year ago
0
problems importing qiime2 files
#99
mdtorohernando
opened
1 year ago
1
Heatmap of microbiomeMarker object
#98
cpavloud
opened
1 year ago
0
No marker identified using run_ancombc() example
#97
fconstancias
opened
1 year ago
1
Error in run_test_multiple_groups function
#96
W-xyue
opened
1 year ago
0
The results of conda lefse and R run_lefse are different.
#95
LeeJH5120
opened
1 year ago
1
after run_lefse, plot_cladogram error
#94
LeeJH5120
opened
1 year ago
4
Applying the run_lefse command.
#93
ricmedveterinario
opened
1 year ago
3
import picrust2 failed: "cannot open compressed file"
#92
azahorik
opened
1 year ago
1
trying to normalize the microbial abundance data for beta diversity
#91
libradaatencio
opened
1 year ago
0
How to choose markers identified by different methods
#90
DrYoungOG
opened
1 year ago
0
plot_ef_bar() legend
#89
KitHubb
opened
1 year ago
0
import the picrust output
#88
najibveto
opened
1 year ago
0
Error in seq_len(nrow(lefse_out)) : argument must be coercible to non-negative integer
#87
marwa38
opened
1 year ago
1
lefse for pairwise testing while having more than 2 groups?
#86
marwa38
opened
1 year ago
0
ANCOM_BC2 error: duplicate 'row.names' are not allowed
#85
oguienko
opened
1 year ago
0
plot_ef_bar() left and right sided bars
#84
mawa86
opened
1 year ago
1
Error in compare_DA: Component taxa/OTU names do not match.
#83
kstagaman
opened
1 year ago
0
run_lefse and missing data handling
#82
mawa86
opened
2 years ago
0
about function "run_test_tow_groups"
#81
work-liuyang
opened
2 years ago
0
picrust2_import with system.file
#80
Lacona
opened
2 years ago
0
From phyloseq-object to microbiomemarker-class-object
#79
mariamaseng
closed
2 years ago
1
how to run_lefse with subgroups and graphing them with plot_ef_bar???
#78
freixas84
opened
2 years ago
0
issues installing from bioconductor
#77
mawa86
closed
2 years ago
4
the script doesn't return any output
#76
madbullahi
opened
2 years ago
1
error in import_qiime2()
#75
DrYoungOG
opened
2 years ago
1
Random effect syntax e.g. using `run_ancom`
#74
fconstancias
opened
2 years ago
3
Plot_ef_bar() returns error for run_aldex() results
#73
marcinschmidt
opened
2 years ago
4
Allow giving a physeq object with an ASV column
#72
SgtVil
closed
2 years ago
6
Why same LEfSe object gives different taxa in Cladogram and LDA BarPlot?
#71
borexino
closed
2 years ago
1
contrast for multiple groups (edgeR)
#70
ignadb
closed
2 years ago
1
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