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I have a collection of metagenomes that were obtained from "freshwater sediment microbial communities" and I'm not entirely sure what ENVO classes to use.
Biome: Freshwater lake? I do not much care…
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As discussed in the meeting, here are the soil fields that we want to use when collecting new specimens (relevant fields taken from an Excel spreadsheet made by Lori Philips for a project).
[Soil_Da…
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4thOct2022-CIH edited ticket for clarity:
In the packages table listing all the terms there are 12 columns, the question is which of those columns are FIXED accross all packages and which are allowed…
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see also
- #1224
[AttributeValue](https://microbiomedata.github.io/nmdc-schema/AttributeValue/)s provide structure for values that MIxS models (and NCBI stores) as strings
[TextValue](https://…
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Currently we maintain a curated list imports/foodon_terms.txt, based on terms that were originally in envo. What is the criteria for adding/removing from that list? Is it terms that may be used for mi…
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The README in `sssom` directory for the GOLD to MIXS mappings.
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Produce result file in Darwin Core Archive format
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## In the berkeley-schema-fy24
- No slots for DeviceEnum
- MAM and Tessmer 2023-11-17
- No slots for ProteolyticEnzymeEnum
- Anastasiya "V" 2023-12-15
### MIxS:
- No slots for freq_c…
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This happens regardless of what MIxS package I load. The other terms in the template seem appropriate for the selected environmental package -- but it seems to be that perhaps the allowable values her…
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- normalize tokens
- document delimiters and grammar