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#### Current behavior:
29 genes are discovered to be uncorrelated with their corresponding reactions in `Pyrimidine metabolism`.
| Gene | UniProtID | Reaction | GPR| Correlation| Manually …
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Hi,
This is not an issue more a technical question. I know that kraken is able to find microbial species in bulk RNAseq. However, when I blast the reads of the found species they dont seem to be m…
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Do you have any recommendations for visualising the output of test_gene_overrepresentation?
Can it/should it use a clusterprofiler viz method: https://yulab-smu.github.io/clusterProfiler-book/ or a…
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Since `alchemiscale` is an execution system for `AlchemicalNetwork`s, not an archival system, we should provide a clear pathway for producing archival-quality extracts of `AlchemicalNetwork`s and thei…
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#### Current behavior:
29 genes are discovered to be uncorrelated with their corresponding reactions in `Arachidonic acid metabolism`
|Gene| UniProtID| Reaction| GPR|Correlation|Manually che…
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Hello Prof. Yu,
I find your clusterProfiler (http://yulab-smu.top/clusterProfiler-book/) a useful tool and tried to follow the tutorial.
Since I am working on the gut microbiome and have KEGG pathwa…
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Currently, TC's text capabilities are limited to using logistic regression on top of BOW encoded text.
While this is suitable for some cases, many use cases require more sophisticated/modern NLP me…
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Hi Mara,
I followed your video about PICRUSt2 and it was very helpful in getting my analyses done.
However, I'm still having difficulty in getting downstream statistical analysis and data visualizat…
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Issues that came up during the August 2024 training
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I applied your script on my data. As you can see in the metadata I have a column called traitment with ( CTRL , TR1 ,TR2 and TR4)
ko_abundance_file