issues
search
stemangiola
/
tidybulk
Brings bulk and pseudobulk transcriptomics to the tidyverse
163
stars
23
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
The sample data of the `test_gene_enrichment()` function reports an error and cannot be used.
#316
zhangkaicr
opened
1 day ago
2
use matrix multiplication
#315
stemangiola
opened
6 days ago
0
return tibble with get action
#314
stemangiola
closed
2 months ago
0
Quantile normalise custom target
#313
stemangiola
closed
2 months ago
0
replace everywhere one_of
#312
stemangiola
closed
5 months ago
0
Fix interactions for de
#311
stemangiola
closed
5 months ago
0
Fix bioc error
#310
stemangiola
closed
5 months ago
0
limma:MakeContrasts integration issues
#309
aodainic7
closed
5 months ago
2
Improve documentation and package imports
#308
william-hutchison
opened
6 months ago
22
add method
#307
stemangiola
closed
2 weeks ago
0
Improve glmmseq
#306
stemangiola
closed
7 months ago
0
Improve random effect dispersion
#305
stemangiola
closed
7 months ago
0
use rworkflow
#304
stemangiola
closed
5 months ago
0
De no forking
#303
stemangiola
closed
8 months ago
0
changed github action
#302
stemangiola
closed
5 months ago
0
Add the method to simplify complete confounders is they are not factor of interest
#301
stemangiola
opened
8 months ago
0
drop sample argument
#300
stemangiola
closed
9 months ago
0
Fix bug reduce dimension
#299
stemangiola
closed
9 months ago
0
Prepare for upcoming Seurat v5 release
#298
Gesmira
opened
9 months ago
0
resolve tidyomics conflicts and docs clean up
#297
chilampoon
closed
9 months ago
12
add method glmmTMB
#296
stemangiola
closed
10 months ago
0
the attribute "internals" $ tt_columns abundance_scaled, carries the environment with it inflating the RDS file size
#295
stemangiola
opened
10 months ago
0
use Matrix library for sparse counts
#294
stemangiola
closed
10 months ago
0
fixes
#293
stemangiola
closed
10 months ago
0
in `test_gene_rank` check if any feature is NA, because pivot_feature will fail
#292
stemangiola
closed
10 months ago
0
if SummarizedExperiment is empty, do not fail
#291
stemangiola
closed
11 months ago
0
add preprocess core method
#290
stemangiola
closed
11 months ago
0
drop dataset
#289
stemangiola
closed
11 months ago
0
Custom dispersion de
#288
stemangiola
closed
11 months ago
1
resolve conflicts for dplyr/tidyr funcs
#287
chilampoon
closed
10 months ago
15
`tidybulk` Remove hard dependency for `DESeq2`
#286
stemangiola
closed
11 months ago
12
turn pseudobulk from scRNAseq with logCPM value back to a seurat object with counts value?
#285
jiangzh-coder
closed
1 year ago
2
modify test to allow tidy mutate
#284
stemangiola
closed
1 year ago
0
Dev
#283
stemangiola
closed
11 months ago
0
Improve the documentation for `tidybulk`
#282
stemangiola
opened
1 year ago
29
Add combat seq
#281
stemangiola
closed
1 year ago
0
test
#280
stemangiola
closed
1 year ago
0
Identify abundant robustify
#279
stemangiola
closed
1 year ago
0
Solve lme4 memory issue
#278
stemangiola
closed
1 year ago
0
added quantile normalisation
#277
stemangiola
closed
1 year ago
0
add tibble based method
#276
stemangiola
closed
1 year ago
0
Dev
#275
stemangiola
closed
1 year ago
0
Allow custom assay for se de
#274
stemangiola
closed
1 year ago
0
Warning in CHECK, mistery
#273
stemangiola
opened
1 year ago
0
Solve conflicts tidyverse
#272
stemangiola
closed
5 months ago
0
Drop bind generics
#271
stemangiola
closed
1 year ago
0
Remove batch effect in test_differential_abundance
#270
jianwu1
closed
1 year ago
0
The first element of assays in SE might be a matrix when using DESeq2 method
#269
xiangpin
opened
1 year ago
6
Add LFC threshold tests for DESeq2
#268
mikelove
closed
1 year ago
6
Update introduction.Rmd
#267
stemangiola
closed
1 year ago
0
Next