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Error information
Parameters used:
/geneseed/Projects/ribo_test_20200415/HepG2/03-star/HepG2/HepG2.Aligned.sortedByCoord.out.bam
/geneseed/Projects/ribo_test_20200415/HepG2_rna/06-STAR_align/…
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https://carpentries-incubator.github.io/bioc-intro/index.html
May be worth linking to or otherwise mentioning? Or at some point coordinating with.
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Dear,
Thank you so much for providing this tool for cell cell interaction,
Please help me to reslove this issue
1. I am using merged seurat file for further analysis by making it cellchat obj…
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### Description of the bug
Hello,
I am trying to run GSEA but I get an error when trying to process the GMT file I obtained from MSigDB.
Previously, I have executed the pipeline without the G…
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[The galaxy Diffbind tool](https://github.com/galaxyproject/tools-iuc/blob/master/tools/diffbind/diffbind.xml) doesn't seem to have an option to use EdgeR instead of DESeq2 underneath. The galaxy Diff…
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Hi,
We have a ATAC/RNA-seq pair-end reads for the input. What kind of options should we be using for the mapping part? What should we expect for the output?
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I read through the paper and went through the tutorial and I am having trouble figuring out how to best use the outputs. From the outputs is it possible to get cell type specific counts for each gene …
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## Quick brainstorm of RNA-Seq research plans.
| Samples |
| --- |
| 001_002_RNA_Blood_Scripps-10-1_02-02-15 |
| 001_002_RNA_Blood_Scripps-1_09-25-14 |
| 001_002_RNA_Blood_Scripps-5_10-29-14 |
| 001_…
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**Project:**
Characterizing the transcriptome of individual cells is fundamental to understanding complex biological systems. Recent developments in single cell RNA sequencing (scRNA-seq) technologies…
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Project UUID: 2043c65a-1cf8-4828-a656-9e247d4e64f1
Project Title: Single-cell RNA-seq analysis throughout a 125-day differentiation protocol that converted H1 human embryonic stem cells to a variety …