xuranw MuSiC issues - Githubissues

xuranw / MuSiC

Multi-subject Single Cell Deconvolution

https://github.com/xuranw/MuSiC

GNU General Public License v3.0

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issues

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New "Too few common genes" bug

#130 alexandriatran closed 1 month ago
1
Memory requirements

#129 gevro opened 2 months ago
1
Error in sum(y) : invalid 'type' (S4) of argument

#128 gevro closed 2 months ago
1
Not enough common genes

#127 Jieran-S closed 4 months ago
1
Integrate R Devcontainer with Docker and Enhance Code Documentation for MuSiC

#126 stephanienguyen2020 closed 4 months ago
0
music_prop is not giving back all cell types

#125 JoyOtten opened 6 months ago
1
Error in solve.default(t(D.weight) %*% D.weight) : system is computationally singular: reciprocal condition number = 1.20065e-19

#124 faeneeR opened 7 months ago
3
Error in validityMethod(as(object, superClass)) : object 'Csparse_validate' not found

#123 BioinfoXP opened 10 months ago
3
Possible to merge multiple single cell datasets to create a reference compatible with MuSiC?

#122 CaitlinGHowe opened 11 months ago
2
Music2 bug in "music2_prop_t_statistics" function

#121 ste-depo opened 11 months ago
2
Too few common genes!

#120 hasanalanya opened 12 months ago
1
Missing immune cell proportions in simulated bulk kidney data

#119 jhylwq123 opened 1 year ago
0
Error in music2_prop_toast

#118 lwhitmore opened 1 year ago
1
Issue in the execution of the function 'music2_prop_t_statistics'

#117 eshan-abbas opened 1 year ago
1
Error with installation: package ‘TOAST’ 1.8.3 was found, but >= 1.10.1 is required by ‘MuSiC’

#116 soueryw opened 1 year ago
3
How to handle TCGA RNAseq data?

#115 apxmfrstmc opened 1 year ago
2
How to manage Multithreading？

#114 JingRanble opened 1 year ago
2
Expression set not recognized and MuSiC version 1 and version 2 incompatible

#113 hasanalanya opened 1 year ago
0
Incompatibility between Jiaxin-Fan/MuSiC2 and xuranw/MuSiC2

#112 alexdray86 opened 1 year ago
0
music_prop: argument "sc.eset" not detected

#111 FrankStarling closed 1 year ago
3
Installing package doesn't work.

#110 YeonuiKwak opened 1 year ago
1
Error in Sigma[m.ids, ] : incorrect number of dimensions

#109 Jiangmeling opened 1 year ago
1
music_prop_toast needs a 'markers' argument

#108 jaclynbeck-sage opened 1 year ago
5
music_prop_t_statistics matrix vs ExpressionSet issue

#107 jaclynbeck-sage opened 1 year ago
2
MuSiC2 issue: Error in MOD0 + mod0 : non-conformable arrays

#106 jaclynbeck-sage opened 1 year ago
8
Cannot install music 1.0.0. with R 3.6.3

#105 alexdray86 opened 1 year ago
0
Update music2.R

#104 xoelmb closed 9 months ago
0
An error in music2_prop_t_statistics function

#103 herong2006 opened 1 year ago
1
music_prop function is wrong

#102 herong2006 opened 1 year ago
1
Error music_basis and music_prop: Error in h(simpleError(msg, call)) : error in evaluating the argument 'i' in selecting a method for function '[': 'x' must be an array of at least two dimensions

#101 YColino opened 1 year ago
1
music_prop not able to handle when y = counts(x)[, clusters %in% ct & samples %in% sid] is single row

#100 btuftin opened 1 year ago
0
Sparse matrix support in MuSiC 1.0 isn't working

#99 jaclynbeck-sage closed 1 year ago
4
unable to install music version 1.0.0

#98 xcliu-oc opened 1 year ago
10
question about single cell reference

#97 sadiexiaoyu opened 1 year ago
0
does MuSiC take .CXB file?

#96 xcliu-oc opened 1 year ago
0
Extract weights for each gene

#95 v1nperez opened 2 years ago
1
music_prop.cluster: Error in if (length(S) != ncol(D)) { : argument is of length zero

#94 sarahbonnin opened 2 years ago
0
Error in solve.default(t(D.weight) %*% D.weight) : Lapack routine dgesv: system is exactly singular: U[2,2] = 0

#93 qnmateen opened 2 years ago
0
Error: music_prop(): Too few common genes

#92 hasanalanya opened 2 years ago
7
(silly?) question: estimating cell type proportions... in single cell data

#91 dgarrimar opened 2 years ago
0
Gene importance for defining cell types

#90 tuhulab opened 2 years ago
1
bulk_construct issues with >100 clusters

#89 bsierieb1 opened 2 years ago
0
fix link to vignette.Rmd

#88 bsierieb1 opened 2 years ago
0
Error in sampleNames(x) : could not find function "sampleNames"

#87 WhalleyT opened 2 years ago
0
Handle Huge Sparse Matrices

#86 julvi opened 2 years ago
7
Release version

#85 PelzKo opened 2 years ago
0
perform anova on deconvoluted single cell output

#84 complexgenome opened 2 years ago
2
Speed up calculation with data.table

#83 shenyang1981 opened 2 years ago
0
Method now works even with one bulk sample

#82 PelzKo opened 2 years ago
0
Is it wrong to deconvolute bulk RNA seq data of a tissue using scRNAseq data of a different tissue?

#81 Tushar-87 opened 2 years ago
0