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xuranw
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MuSiC
Multi-subject Single Cell Deconvolution
https://github.com/xuranw/MuSiC
GNU General Public License v3.0
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Method now works even with one bulk sample
#82
PelzKo
opened
3 years ago
0
Is it wrong to deconvolute bulk RNA seq data of a tissue using scRNAseq data of a different tissue?
#81
Tushar-87
opened
3 years ago
0
Error in nnls(D.weight, Y.weight) :
#80
woshiyangsi
opened
3 years ago
3
single cell samples from different runs || how to proceed
#79
complexgenome
opened
3 years ago
1
Is clustering cells necessary in MuSiC deconvolution?
#78
kabirium
opened
3 years ago
0
adding direct function call of pVal
#77
PelzKo
closed
3 years ago
2
package ‘MuSiC’ is not available (for R version 4.0.0)
#76
complexgenome
closed
3 years ago
4
Fix typo: abudance -> abundance
#75
mschilli87
closed
3 years ago
2
Problems with bulk_construct
#74
bieniu777
opened
3 years ago
1
Prop_comp_multi/Abs_diff_multi: Fix text annotation
#73
mschilli87
closed
3 years ago
0
Fix typo in vignette
#72
mschilli87
closed
3 years ago
0
Correct GSE50244.EMTAB.prop --> Est.prop.GSE50244
#71
julvi
opened
3 years ago
1
Missing cell types in music_prop() output
#70
aditisk
opened
3 years ago
1
Using MuSiC to validate sorted cell sample content
#69
roni-fultheim
opened
3 years ago
0
How to turn-off gene length bias correction
#68
hd00ljy
opened
3 years ago
0
Not enough valid cell type
#67
michy999
opened
3 years ago
0
music_prop help and gene IDs
#66
Willi4mHunt
closed
3 years ago
0
music_prop 'negative entry appears' error
#65
jk86754
opened
3 years ago
2
The true cell type proportions in the artificial bulk data
#64
empiricalbayes
opened
3 years ago
0
How can i get an adjusted expression matrix?
#63
soleilll
opened
3 years ago
0
Does normalized expression data work well?
#62
yingyonghui
opened
3 years ago
1
Error in orig[[nm]][i, , ..., drop = drop] : subscript out of bounds
#61
Zifeng-L
opened
3 years ago
3
creating expression sets from bulk and single cell RNA seq
#60
KBoostan
opened
3 years ago
3
Does it matter that the snRNA-seq data and bulk data have very different ranges of values?
#59
lahuuki
opened
3 years ago
0
Validation of cell type estimation with prior knowledge
#58
Tushar-87
opened
3 years ago
4
r.squared.full have negative values
#57
thongnt2
opened
3 years ago
1
Error in relative.ab(exprs(bulk.eset)[m.bulk, ]) : Negative entry appears!
#56
MichaelPeibo
closed
3 years ago
1
Minimum number of cell types?
#55
uklejaj
opened
3 years ago
0
fixed minor bugs in music_prop() with ct.cov = TRUE
#54
matei-ionita
closed
3 years ago
0
Error in music_prop(bulk.eset = GSE50244.bulk.eset, sc.eset = EMTAB.eset, ct.cov = TRUE, : object 'i' not found
#53
matei-ionita
opened
4 years ago
0
Prop_comp_multi : Aesthetics must be either length 1 or the same as the data (9): label
#52
Jason-bot-stack
closed
3 years ago
7
music_prop.cluster:Error in if (sum(abs(p.weight.new - p.weight)) < eps) { : missing value where TRUE/FALSE needed
#51
Jason-bot-stack
opened
4 years ago
11
Loading Test Files and Number of Single Cell
#50
uklejaj
closed
3 years ago
0
Error in colMeans(S, na.rm = TRUE): 'x' must be an array of at least two dimensions
#49
mooreann
opened
4 years ago
4
QC steps and also an unassigned variable in tutorial code
#48
klai001
opened
4 years ago
0
Error in colMeans(S, na.rm = TRUE) : 'x' must be an array of at least two dimensions
#47
lila167
opened
4 years ago
2
The datasets in 'https://xuranw.github.io/MuSiC/data/' are not available or corrupted
#46
lila167
closed
4 years ago
0
Dose bulk-RNA data batch matter?
#45
dodoflyy
opened
4 years ago
1
Can't install package
#44
giovp
closed
4 years ago
8
Tutorial: IEmarkers.Rdata
#43
DSJM
opened
4 years ago
2
Benchmark evaluation tutorial error with plot_grid
#42
RinconFer
opened
4 years ago
0
music_prop.cluster
#41
mhimanshu11
opened
4 years ago
3
object 'GSE50244.EMTAB.prop' not found
#40
RinconFer
closed
4 years ago
2
May I ask some puzzled questions ?
#39
huitingxiao
opened
4 years ago
0
music_prop.cluster: Error in nnls(D.weight, Y.weight) NA/NaN/Inf...
#38
OrionT-ox
opened
4 years ago
2
May I obtain your permission ?
#37
MikuGene
opened
4 years ago
0
Added cell_size parameter
#36
ksosina
closed
4 years ago
0
requirement on cell number per cell type
#35
nfancy
opened
4 years ago
0
How to perform deconvolution with RPKM values
#34
chenming9453
opened
4 years ago
1
Error: Not enough cell types! when do the cell type proportion estimates
#33
Jia21
opened
4 years ago
2
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