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Writing MERSCOPE data may use a lot of RAM. This is because the `.tif` image chunks are not detected when using `imread` from `dask_image`, so the full image has to be loaded during image writing.
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I trained a cellpose model and used it with a morphology2D file outside of sopa and got pretty good results, however when running it with the same image on sopa I don't get as many cells. I think it m…
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Hi,
Thank you for SOPA, it looks really helpful. I'd love to use the cell segmentation resolver. However, I'm struggling a little with how best to implement.
I have custom segmentation for a…
EST09 updated
4 months ago
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Thank you for your great sopa project.
I hope, it will help more people as me, who are not bioinformaticians, but biologists.
I have a problem with processing Vizgen-merscope dataset. I have my rea…
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Hi,
I optimized segmentation very nicely now and the output looks very nice.
One problem that still occurs is along the edges of the tiles that get created for cellpose.
![grafik](https://git…
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Hi Sopa development team,
Sopa looks like a perfect fit for what I've been trying to do with integrating IF stains with Baysor re-segmentation. However, I've been having trouble figuring out how to…
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**Is your feature request related to a problem? Please describe.**
I think the output of CosMX files has changed since sopa was developed.
**Describe the solution you'd like**
Could you suggest …
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Hi,
Just a conceptual suggestion in the CLI tutorial. It would be more intuitive if `sopa segmentation cellpose` can automatically run on all the patches generated by `sopa patchify image` without …
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Hello, I want to merge two NAV350 units for autonomous robot navigation. The IP and port of the NAV350s mounted on the robot are as follows.
IP: 192.168.127.32
Port:2112
IP: 192.168.127.32
P…
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Project Version:
commit 29915a0dabe3caec97c4d2e17cf10903b0a5f1f4
Author: Bryan Chavarría Hughes
Date: Fri Mar 26 13:42:36 2021 -0600
Se comentó el middleware para evitar conflictos
The…