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The bulk download includes documents that should be excluded.
@jvwong, would you list out the `status` values that should be included (`submitted` etc.)?
For example, here is one document that…
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Hi Hwan,
Thanks for this nice tool! I want to try it on my RNA-seq data but the species (Rhesus) is not included in Repbase. So I want to create a `FASTA` file for `SalmonTE`.
I've seen this tut…
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In GitLab by @oliviermeslin on Jun 2, 2020, 14:21
Cette _issue_ est une discussion sur le contenu et le plan de la première partie de la documentation. Je propose un premier plan, avec des idées en v…
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il faut une requête en v2 pour lister les Représentations et en sortir les dates.
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I was trying to modify the UniRef30 database (from the file UniRef30_2020_03_hhsuite.tar.gz at http://wwwuser.gwdg.de/~compbiol/uniclust/2020_03/) to remove all non-transposable elements. I was unpack…
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Hello I am new to Bismark, I am encountering a problem. please see below:
The IDs of Read 1 (#!/usr/bin/env perl
) and Read 2 (use warnings;
) are not the same. This might be the result of sortin…
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Dear Felix,
I recently began analyzing bisulfite sequencing data without much background of experience.
I'm focusing on analyzing DNA methylation of repetitive elements in human genome like transp…
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I couldn't find this information in the publication.
Thanks,
Stephen
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some organisms like Malus(apple) just have a TE annotation gff3 ,how to get a curated annotation of the transposable elements?
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**What is this request referring to?**
#487
Parent | labels | Synonyms | about
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SO:0000186 | LTR/Copia | RLC, Ty1, Copia, LTR-Copia | LTR retrotransposon in the Copia superfami…