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bobeobibo
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phigaro
Phigaro is a scalable command-line tool for predicting phages and prophages
MIT License
46
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15
forks
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issues about output Files
#46
qianxin-kxy
closed
5 months ago
1
issues on output files
#45
qianxin-kxy
closed
5 months ago
0
Can the location where the intermediate file is generated be changed to be inside the output file?
#44
Dx-wmc
closed
5 months ago
3
What is the latest version of phigaro ?
#43
duboism
closed
5 months ago
1
Don't store program and data location in config files
#42
duboism
opened
1 year ago
2
glibc incompatible
#41
GracaP88
closed
5 months ago
3
Could not download database of phigaro
#40
quliping
closed
1 year ago
4
Wrong paths are used when installing figaro via conda
#39
kabilov
closed
5 months ago
1
Html result file error
#38
liuxiong714
closed
5 months ago
1
Update environment.yml
#37
alvlako
closed
5 months ago
0
Short Sequences
#36
antixz1
closed
5 months ago
1
Output coordinates are off by 1
#35
snystrom
closed
5 months ago
2
db download :: download.ripcm.com/phigaro/ broken
#34
EricDeveaud
closed
2 years ago
6
TypeError: object.__new__(BlockManager) is not safe, use BlockManager.__new__()
#33
jdwinkler-lanzatech
opened
2 years ago
17
Calculation of the number of intact and defective prophages
#32
abhinavyesss
closed
3 years ago
1
Can't understand the option "-d: Exclude sequences with length < 20000 automatically".
#31
ChenTianYi99
closed
2 years ago
2
Empty output file in some genomes
#30
Daikuang
closed
3 years ago
4
phigaro-setup - non-interactive setup possible?
#29
rpetit3
closed
3 years ago
5
pvog database link not working
#28
Handymanalan
closed
3 years ago
2
Unable to run `sudo phigaro-setup`
#27
gabriellovate
closed
3 years ago
4
Modes Description
#26
SionBayliss
closed
3 years ago
1
Are there plans to submit Phigaro to Bioconda?
#25
rpetit3
closed
3 years ago
6
Include phigaro in What the Phage (WtP)?
#24
chris-rands
closed
3 years ago
2
KeyError: 'mean_gc'
#23
snayfach
closed
3 years ago
1
Config file error
#22
snayfach
closed
3 years ago
1
Error with a big multifasta file
#21
luayou
closed
3 years ago
2
output directory name generation :: breaks when local dir used
#20
EricDeveaud
closed
4 years ago
6
Add relevant badges
#19
chris-rands
closed
4 years ago
0
How are transposable elements determined?
#18
snayfach
closed
4 years ago
1
Code style via `black`
#17
chris-rands
closed
4 years ago
0
Using phigaro via conda
#16
chris-rands
closed
4 years ago
1
Fix output path when not in the form -o dir/file
#15
chris-rands
closed
4 years ago
0
Remove Error for sequences < 20000 bp
#14
vinisalazar
closed
4 years ago
1
use command instead of locate
#13
EricDeveaud
opened
4 years ago
4
Can the GC score calculation be improved?
#12
chris-rands
closed
5 months ago
2
please tag a release
#11
EricDeveaud
closed
4 years ago
3
Input prodigal GFF/output prophage call in GFF format?
#10
jdwinkler-lanzatech
closed
4 years ago
8
fix pyYAML requirement; suggest no sudo
#9
chris-rands
closed
4 years ago
0
'Readme.md' couldn't be found during installation
#8
LSTUGA
closed
4 years ago
1
Ensure Readme.md is correct name
#7
chris-rands
closed
5 years ago
1
Cannot download fasta sequences
#6
tauqeer9
closed
3 years ago
8
Update urls to correct ones
#5
chris-rands
closed
5 years ago
0
Leav only _version.py file
#4
chris-rands
closed
5 years ago
0
Improve text information
#3
chris-rands
closed
5 years ago
0
Keep only the Readme.md
#2
chris-rands
closed
5 years ago
0
Fix typo from soap to soup
#1
chris-rands
closed
5 years ago
0