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Hello dev team,
I would like to try out your new tool on my multiomics (scRNA&scATAC-seq) dataset. I processed it with Seurat and Signac. I dont have ArchR object. Is there a way to use Signac pro…
momur updated
6 months ago
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I performed the motif enrichment analysis and motif deviation analysis following the codes written in Chapter12 and 13.
Motifs whose accessibility was enriched in each cluster were successfully deter…
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Hi! it's a great tool to use. However, After adding precomputated graph from an integrated Seurat Object (integrated using RPCA) into milo Object, makeNhoods could not identify valid graph for process…
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I was running getGroupBW to save bigWig files but got these errors:
```
> getGroupBW(fetal_lung_clean, groupBy = "cell_type")
ArchR logging to : ArchRLogs/ArchR-getGroupBW-703d349bd3-Date-2021-12-0…
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Hi! I have a technical question. I have a set of scRNA that has been processed and labeled in Seurat and I wish to use that data to identify a set of scATAC-seq that have been processed in ArchR.
I…
wfma updated
7 months ago
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Hi,
I have a single cell multiomics (RNA + ATAC seq) dataset, and have used another programme (ArchR) to generate pseudotime trajectories. I have 2 trajectories of interest - for each I have a matr…
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Hi @All,
Sorry bother again,
I am unable to work well for the ArchR because i am unclear for the really steps for the archr workflow so much.
For the step like below, occurred erro…
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Hi! I am a developer for HuBMAP Consortium and we use ArchR for our [ATAC-seq pipeline](https://github.com/hubmapconsortium/sc-atac-seq-pipeline). I am [currently updating](https://github.com/hubmapco…
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Hi!
in our lab (Schlesner Lab, recently moved from Heidelberg right into your neighborhood - Augsburg University), we have different use cases where it would be quite helpful if AnnData objects cou…
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I am currently trying to convert 5 samples contained within an ArchR project into Signal/Seurat object. I have managed to set up okay however once I try and run ArchR2Signac() I am met with the follow…