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Hi,
I tried to reproduce the experimentation result on MIMIC3 dataset from the paper. However, I think there might be something wrong probably in the setting.
I got the results as the last 2 rows.…
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Hi,
Thanks for sharing the codes. When you use DoubletFinder, I think you need to do `FindVariableFeatures `first and then only do `ScaleData`. Your current code is showing the other way around.
…
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Hi Aditya,
I would like to ask what if the ground truth network I have does not have "+" (activation) or "-" (repression). Is it still possible to run evaluation process? I only know that there exi…
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Add Precision Recall Curve,
for example
```
mp_ranger
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- https://stats.stackexchange.com/questions/10501/calculating-aupr-in-r
- https://github.com/DominikRafacz/auprc
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https://github.com/kexinhuang12345/DeepPurpose/blob/6016a833de66bc56fe3a81e4c0f482b1624d970a/DeepPurpose/models.py#L757
function `test_` returns 5 items not 4 when `binary` is `True`
this line s…
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Like @zenalapp suggested, it would be a good idea to export a figure that shows the user whether they are exhausting the tuning for hyperparameters (e.g. using all the cost parameters until we see a g…
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Hi!
I am quite interested in the evaluation of different GRN inference models. However, I have a question. What is the point of having duplicated rows in the refNetwork.csv example file?
For e…
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I am attempting to reproduce the results in your paper and then train models on my own dataset, but several models failed to train, saying "ValueError: cannot reshape array"
Any idea on how to fix …
ghost updated
3 years ago
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hello dear tuncadogan,
deepscreen_models_hyperparameters_performance_results.tsv does not have a column called 'test threshold' which will be needed in the program when predicting DTIs, could you p…