Murali-group Beeline issues

Murali-group / Beeline

BEELINE: evaluation of algorithms for gene regulatory network inference

GNU General Public License v3.0

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Python & R versions specified in setupAnacondaVENV.sh are not available

#128 nekonekko opened 2 months ago
3
Pull Request for NRNB issue 238: Using Foundation model for GRN Inference

#127 FaizalJnu opened 3 months ago
0
Faster way of performing AUC Evaluations on larger datasets.

#126 FaizalJnu opened 3 months ago
0
Automatic generation of reference networks

#125 yiqisu opened 3 months ago
0
Reference networks

#124 yiqisu opened 3 months ago
0
Updates of experimental scRNA-seq data source and analysis

#123 yiqisu opened 3 months ago
0
Calculate AUC by sign

#122 yiqisu closed 3 months ago
0
Data download

#121 yiqisu opened 3 months ago
0
Preprocessing for scRNA-seq and scATAC-seq data

#120 yiqisu opened 3 months ago
0
Check the consistency of TFEdges and selfEdges

#119 yiqisu opened 3 months ago
0
Update computeEarlyPrec.py

#118 yiqisu closed 4 months ago
0
Add NG-SEM to BEELINE

#117 yutuyt01 opened 4 months ago
0
Add the NG-SEM algorithm

#116 yutuyt01 opened 4 months ago
0
Adding MICA, DeepMAPS based GRN Inference and Visualization of GRNs

#115 code-bele opened 4 months ago
0
Add the TENET algorithm

#114 yutuyt01 opened 4 months ago
0
Add TENET algorithm

#113 yutuyt01 opened 4 months ago
0
Bump scikit-learn from 0.21.2 to 1.5.0

#112 dependabot[bot] opened 5 months ago
0
No general command to run SINGE across different OS

#111 kevchen03 opened 5 months ago
0
Windows pipeline support for BLRunner and BLEvaluator

#110 yutuyt01 opened 5 months ago
0
Algorithm SINGE fails to run on Windows - Unterminated quoted string

#109 yutuyt01 opened 5 months ago
1
Bump scikit-learn from 0.24.1 to 1.0.1 in /Algorithms/SCSGL/scSGL

#108 dependabot[bot] closed 5 months ago
1
Dockerfile fixes for ARBORETO, PIDC, SCRIBE, SINCERITIES, SINGE

#106 yutuyt01 closed 5 months ago
0
Dockerfile compatibility issues with various algorithms, failing to build

#105 yutuyt01 closed 5 months ago
0
BEELINE Installation Failure on Windows

#104 kevchen03 opened 6 months ago
2
Bump tqdm from 4.28.1 to 4.66.3

#103 dependabot[bot] opened 7 months ago
0
Update Dockerfile - BTR

#102 code-bele opened 8 months ago
0
Update Dockerfile - LEAP

#101 code-bele opened 8 months ago
0
Update Dockerfile

#100 code-bele opened 8 months ago
0
Unable to build and run docker containers

#99 code-bele closed 5 months ago
1
where is the tfs+500 and tfs+1000 datasets?

#98 prsigma closed 8 months ago
2
RankedEdges.csv file missing

#97 Aishwarya-Girish closed 4 months ago
2
tenetDockerfile

#96 packers12345 opened 1 year ago
0
tenetRunner.py

#95 packers12345 opened 1 year ago
0
Download single cell datasets from different portals

#94 yiqisu closed 8 months ago
1
PIDC method error and not generating any outputs [ERROR: LoadError: MethodError: no method matching setindex_shape_check(::Int64, ::Int64)]

#93 elhaam opened 1 year ago
4
Not able to run GENIE3 and GRNBOOST2

#92 Aishwarya-Girish opened 1 year ago
8
Reduce Disk Space for ExpressionData.csv Copies

#91 ktakers opened 1 year ago
0
Question about BEELINE PseudoTime.csv file format in BEELINE-data?

#90 gangcai opened 1 year ago
2
scTenifoldNet + SCORPION Docker + Runners Added

#89 dosorio opened 1 year ago
1
Update _init_.py in BLRun and BLEval folders to run every sub-directory of dataset_dir automatically

#88 yiqisu closed 3 months ago
0
Update r-base and gcc

#87 yiqisu closed 1 year ago
0
Update r-base version in Dockerfiles and init.py in BLRun & BLEval

#86 yiqisu closed 1 year ago
2
Add support for running BEELINE on multiple datasets specified implicitly

#85 tmmurali opened 2 years ago
0
Update documentation for BLEvaluator.py

#84 packers12345 opened 2 years ago
0
Update runner.py

#83 packers12345 closed 1 year ago
0
Update config.yaml

#82 packers12345 closed 1 year ago
0
Create tenetRunner.py

#81 packers12345 closed 1 year ago
0
Original branch

#80 yiqisu closed 2 years ago
0
added tutorial quickstart config files with minor changes in Beeline

#79 blessyantony9 opened 2 years ago
1
Erroneous message printed during initialization of Beeline

#78 blessyantony9 closed 2 years ago
1