Murali-group Beeline issues

Murali-group / Beeline

BEELINE: evaluation of algorithms for gene regulatory network inference

GNU General Public License v3.0

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Adding MICA based GRN Inference

#115 code-bele opened 3 days ago
0
Add the TENET algorithm

#114 yutuyt01 opened 1 week ago
0
Add TENET algorithm

#113 yutuyt01 opened 1 week ago
0
Bump scikit-learn from 0.21.2 to 1.5.0

#112 dependabot[bot] opened 4 weeks ago
0
No general command to run SINGE across different OS

#111 kevchen03 opened 4 weeks ago
0
Windows pipeline support for BLRunner and BLEvaluator

#110 yutuyt01 opened 1 month ago
0
Algorithm SINGE fails to run on Windows - Unterminated quoted string

#109 yutuyt01 opened 1 month ago
1
Bump scikit-learn from 0.24.1 to 1.0.1 in /Algorithms/SCSGL/scSGL

#108 dependabot[bot] closed 4 weeks ago
1
Dockerfile fixes for ARBORETO, PIDC, SCRIBE, SINCERITIES, SINGE

#106 yutuyt01 closed 1 month ago
0
Dockerfile compatibility issues with various algorithms, failing to build

#105 yutuyt01 closed 1 month ago
0
BEELINE Installation Failure on Windows

#104 kevchen03 opened 1 month ago
2
Bump tqdm from 4.28.1 to 4.66.3

#103 dependabot[bot] opened 2 months ago
0
Update Dockerfile - BTR

#102 code-bele opened 3 months ago
0
Update Dockerfile - LEAP

#101 code-bele opened 3 months ago
0
Update Dockerfile

#100 code-bele opened 3 months ago
0
Unable to build and run docker containers

#99 code-bele closed 2 weeks ago
1
where is the tfs+500 and tfs+1000 datasets?

#98 prsigma closed 4 months ago
2
RankedEdges.csv file missing

#97 Aishwarya-Girish opened 11 months ago
1
tenetDockerfile

#96 packers12345 opened 1 year ago
0
tenetRunner.py

#95 packers12345 opened 1 year ago
0
Download single cell datasets from different portals

#94 yiqisu closed 4 months ago
1
PIDC method error and not generating any outputs [ERROR: LoadError: MethodError: no method matching setindex_shape_check(::Int64, ::Int64)]

#93 elhaam opened 1 year ago
4
Not able to run GENIE3 and GRNBOOST2

#92 Aishwarya-Girish opened 1 year ago
8
Reduce Disk Space for ExpressionData.csv Copies

#91 ktakers opened 1 year ago
0
Question about BEELINE PseudoTime.csv file format in BEELINE-data?

#90 gangcai opened 1 year ago
2
scTenifoldNet + SCORPION Docker + Runners Added

#89 dosorio opened 1 year ago
1
Update _init_.py in BLRun and BLEval folders to run every sub-directory of dataset_dir automatically

#88 yiqisu opened 1 year ago
0
Update r-base and gcc

#87 yiqisu closed 1 year ago
0
Update r-base version in Dockerfiles and init.py in BLRun & BLEval

#86 yiqisu closed 1 year ago
2
Add support for running BEELINE on multiple datasets specified implicitly

#85 tmmurali opened 1 year ago
0
Update documentation for BLEvaluator.py

#84 packers12345 opened 1 year ago
0
Update runner.py

#83 packers12345 closed 1 year ago
0
Update config.yaml

#82 packers12345 closed 1 year ago
0
Create tenetRunner.py

#81 packers12345 closed 1 year ago
0
Original branch

#80 yiqisu closed 1 year ago
0
added tutorial quickstart config files with minor changes in Beeline

#79 blessyantony9 opened 2 years ago
1
Erroneous message printed during initialization of Beeline

#78 blessyantony9 closed 2 years ago
1
Implement GRN visualization for evaluated algorithms

#77 ktakers opened 2 years ago
1
Upload experimental scRNA-Seq configuration files to Zenodo

#76 ktakers opened 2 years ago
0
False success messages posted after erroneous execution of docker commands in initialize.sh

#75 blessyantony9 closed 1 month ago
0
Allow metrics to be selected for curated overview plots in BLPlotter

#74 ktakers opened 2 years ago
0
Correct BLPlotter cell text in curated overview plot

#73 ktakers closed 2 years ago
1
Add legend to BLPlotter curated overview plots

#72 ktakers closed 2 years ago
1
BLPlotter center curated overview plot headers

#71 ktakers opened 2 years ago
1
Bump numpy from 1.15.4 to 1.22.0

#70 dependabot[bot] opened 2 years ago
0
Docker image for BEELINE with quickstart config

#69 blessyantony9 closed 2 years ago
0
Make BEELINE installable through a Docker image

#68 tmmurali closed 2 years ago
1
Some problem of reproducing Fig.5 results

#67 JaneJiayiDong opened 2 years ago
1
Terminal/system halt when running "python BLRunner.py --config config-files/config.yaml" in the BEELINE conda environment

#66 shachafl closed 1 year ago
10
Fail to reproduce Fig.5 results for human data

#65 jonathan-f opened 2 years ago
4