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Murali-group
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Beeline
BEELINE: evaluation of algorithms for gene regulatory network inference
GNU General Public License v3.0
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Allow metrics to be selected for curated overview plots in BLPlotter
#74
ktakers
opened
2 years ago
0
Correct BLPlotter cell text in curated overview plot
#73
ktakers
closed
2 years ago
1
Add legend to BLPlotter curated overview plots
#72
ktakers
closed
2 years ago
1
BLPlotter center curated overview plot headers
#71
ktakers
opened
2 years ago
1
Bump numpy from 1.15.4 to 1.22.0
#70
dependabot[bot]
opened
2 years ago
0
Docker image for BEELINE with quickstart config
#69
blessyantony9
closed
2 years ago
0
Make BEELINE installable through a Docker image
#68
tmmurali
closed
2 years ago
1
Some problem of reproducing Fig.5 results
#67
JaneJiayiDong
opened
2 years ago
1
Terminal/system halt when running "python BLRunner.py --config config-files/config.yaml" in the BEELINE conda environment
#66
shachafl
closed
1 year ago
10
Fail to reproduce Fig.5 results for human data
#65
jonathan-f
opened
2 years ago
4
BLPlot
#64
michavol
opened
2 years ago
2
Errors when running initialize.sh
#63
semrau
opened
2 years ago
2
Python newer yaml versions require yaml.full_load or yaml.safe_load
#62
eniktab
closed
2 years ago
1
SCNS ranked edges
#61
TiamHeydari
closed
2 years ago
2
Fail to run the code
#60
yarkable
closed
2 years ago
1
Test multiple parameters for the same method?
#59
ekernf01
closed
2 years ago
2
How to compute the variance of genes using 'gam'.
#58
mahp-scut
closed
2 years ago
2
ground truth for example dataset
#57
xPandasx
closed
2 years ago
0
Nan value in PIDC results
#56
WWXkenmo
opened
3 years ago
2
adding new files
#55
xPandasx
closed
3 years ago
1
docker image
#54
ghost
opened
3 years ago
2
Running without trueEdges (refNetwork.csv)
#53
doncarlos999
closed
3 years ago
2
curated datasets
#52
lila167
opened
3 years ago
8
Issues with Beeline on Fedora 27
#51
niclaspopp
opened
3 years ago
4
Bump pyyaml from 5.1.1 to 5.4
#50
dependabot[bot]
closed
2 years ago
0
Data availability from paper
#49
calebclayreagor
closed
3 years ago
1
BLRunner stuck on "OSError: Timed out trying to connect to 'inproc://172.17.0.2/10/1'" while running arboreto
#48
Oakento
closed
3 years ago
2
Use Docker hub image for algorithms, instead of building from Dockerfile
#47
adyprat
closed
3 years ago
0
Not able to run GENIE3 and GRNBOOST2
#46
Zengggg
closed
3 years ago
3
Not able to run SCRIBE
#45
Zengggg
closed
3 years ago
4
Not able to run some algorithms
#44
Zengggg
closed
3 years ago
3
Lacking of "Type" in ground truth network
#43
Hsu-Che-Wei
closed
3 years ago
3
Not able to run example data with most of the algorithm
#42
Hsu-Che-Wei
closed
3 years ago
5
Fix #40 for failed container build for SCODE
#41
ibebio
opened
3 years ago
1
SCODE Docker container failing to build
#40
ibebio
closed
3 years ago
5
An issue of Beeline/Algorithms/SCRIBE/runScribe.R
#39
AprilYuge
closed
4 years ago
4
Duplicated rows on refNetwork.csv
#38
joseale2310
closed
4 years ago
1
Problems running GRNBoost and GENIE3 on the example data
#37
sotolm
closed
3 years ago
3
Updating rst files for BoolODE
#36
amoghpj
opened
4 years ago
1
Rebuild docs with new BoolODE documentation
#35
amoghpj
opened
4 years ago
1
Add scripts to download and preprocess ground-truth networks for experimental scRNA seq-datasets
#34
tmmurali
closed
3 years ago
4
Improving SINGE compatibility
#33
atuldeshpande
opened
4 years ago
17
Does this program consider edge's direction when calculate roc_curve?
#32
Kaiton7
opened
4 years ago
3
Will you upload Supplementary Section ?
#31
Kaiton7
closed
4 years ago
4
bioRxiv Figure 3
#30
rcannood
closed
4 years ago
2
using dynverse/dyngen to simulate the synthetic datasets
#29
rcannood
opened
5 years ago
4
Update README.md
#28
jlaw9
closed
5 years ago
1
Computes a quantitative measure that assesses accuracy of network inference by also accounting for indirect paths
#27
adbharadwaj
closed
5 years ago
0
Integrated borda analysis code and added borda command
#26
adbharadwaj
closed
5 years ago
0
Error with Monocle
#25
jlaw9
closed
5 years ago
2
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