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Murali-group
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Beeline
BEELINE: evaluation of algorithms for gene regulatory network inference
GNU General Public License v3.0
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Computes a quantitative measure that assesses accuracy of network inference by also accounting for indirect paths
#27
adbharadwaj
closed
5 years ago
0
Integrated borda analysis code and added borda command
#26
adbharadwaj
closed
5 years ago
0
Error with Monocle
#25
jlaw9
closed
5 years ago
2
Error in inputPath derivation in runner scripts
#24
cflerin
closed
5 years ago
1
Add updated documentation
#23
adyprat
closed
5 years ago
4
Demonstrate performance difference between dynverse models and GNW output
#22
amoghpj
closed
5 years ago
0
Read each paper for best practices suggested by authors
#21
tmmurali
closed
5 years ago
3
Compute a stability score for outputs from each dataset
#20
jlaw9
closed
5 years ago
4
Visualization of reconstruction of wiring diagrams
#19
jlaw9
closed
5 years ago
3
Evaluate edges by treating them as undirected.
#18
adyprat
closed
5 years ago
3
Handling nodes without incoming edges in bool models
#17
amoghpj
closed
5 years ago
4
Add a new repository for evaluation/post hoc analysis, call it RNEval or something for now.
#16
adyprat
closed
5 years ago
4
Perform systematic parameter searches for each algorithm
#15
jlaw9
closed
2 years ago
5
Debug/Document the code
#14
sahasradude
closed
5 years ago
0
Figure out licensing of individual software used in the evaluation pipeline and check if they are GPL3 compatible?
#13
adbharadwaj
closed
5 years ago
0
List website user operations
#12
adbharadwaj
closed
5 years ago
1
Create mock-up of front-end interface.
#11
adbharadwaj
closed
5 years ago
1
Setup EC2 instance with a webserver
#10
adbharadwaj
closed
5 years ago
2
Analysis of outputs from different methods
#9
adyprat
closed
5 years ago
2
Comparison of outputs from different methods.
#8
adyprat
closed
4 years ago
1
Analysis of network motifs
#7
sahasradude
closed
5 years ago
1
Add analysis on network structures provided by dynverse
#6
amoghpj
closed
5 years ago
1
Experimental single cell expression datasets
#5
amoghpj
closed
5 years ago
2
GRN ground-truth datasets
#4
amoghpj
closed
5 years ago
2
Synthetic Datasets (dynverse networks)
#3
amoghpj
closed
5 years ago
1
Curate Boolean models from literature
#2
amoghpj
closed
5 years ago
12
Run-time analysis
#1
sahasradude
closed
5 years ago
0
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