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### What happened?
`select_xfm` is failing on
### What command did you use?
```shell
singularity run -e --containall -B ${scratch},${cache_dir}\
${fmriprep_img} $scratch/data $scratch/data/deriva…
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Brain cell finder is a tool for fully automated localization of soma in 3D mouse brain images acquired by confocal light sheet microscopy.
https://github.com/paolo-f/bcfind
Started here:
https:…
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There are some great workflows to convert a directory of dicoms into a BIDS compliant format. However, the source dicoms remain identifiable which limits the ability to share source data. At our insti…
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**Hello,**
**I am a new beginner of fitlins. I was trying to run the first level of my fmriprep processed data (in bids format), however, it stopped at an error after a few minutes, as below:**
…
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Hi Michael,
first of all - thanks for these really helpful tutorials! I managed to translate a lot of what you describe into my particular use case.
Now I would like to scale things up a bit and…
loupl updated
4 years ago
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### What happened?
We are running fmriprep on a dataset composed by two different sessions, each one with two tasks and two resting-state. Each task has 5 runs.
The pipeline crashes when doing th…
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in a discussion with @LucaLaFisca on LIMO and BIDS, we identified that a common task for the user in his/her script is to construct a BIDS compliant filename. Having a function to help with this, and …
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On a MacOS Monterey 12.0.1:
(1) Downloaded 0.2.1 tar.gz -- unzipped
(2) Cd'd into folder, edited the Dockerfile to include `-y` flag for apt upgrade (otherwise `docker build .` fails since it never …
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I'm woking with the `ds000246` OpenNeuro dataset:
```
$ aws s3 sync --no-sign-request s3://openneuro.org/ds000246 ds000246
$ cd ds000246/sub-emptyroom/meg
```
Reading the data works as expect…
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I think the BIDS documentation on [the inheritance principle](https://bids-specification.readthedocs.io/en/stable/02-common-principles.html#the-inheritance-principle) and sample [OpenNeuro datasets](h…