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Hi,
I'm running MAESTRO scATAC-seq with bam file according to the manual, and it reports an error: /bin/bash: picard: command not found.
![image](https://user-images.githubusercontent.com/34993…
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https://mp.weixin.qq.com/s/XJlEZviLZEhf79p84itRaw
ixxmu updated
2 years ago
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Hello,
I am trying deconvolution of bulk RNA-seq data based on brain structure expression patterns on my organoids. It works great when I use structures from custom_2, but when I run it on custom_1…
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Hello,
Thank you for creating such an amazing tool. [CIBERSORTx](https://www.nature.com/articles/s41587-019-0114-2) can produce cell-type specific gene expression profiles from bulk RNA-Seq. The au…
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https://mp.weixin.qq.com/s/rK7FFQuEPKpEU6qYbVB4Rw
ixxmu updated
3 years ago
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https://mp.weixin.qq.com/s/FMMXEJQQZSK5UHVE3uoxVw
ixxmu updated
2 years ago
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Hi,
Thanks for update MAESTRO, I have installed the latest MAESTRO but it reports an error:
Seems it is Seurat problem? My Seurat version is 3.99
> Registered S3 method overwritten by 'GGally…
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Currently, mcpcounter and xcell docker containers work well in the workflow. Need to bring cibersortx in.
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Hi.
We are trying to reproduce your deconvolution method for RNA-seq using the matrix of mixes you provide on your github (TPMPBMC.txt). Your method returns a matrix of 'beta' coefficients that, theo…
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November 9, 11:51 AM
Using BRCA and HNSC, CIBERSORT proportion, three types of aggregate (lm06, lm11, lm22, detailed can be found in
`/home/yujia/Project/2020-11-06-TCGA_pancancer_immune/dat/cibe…