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As I am reproducing this analysis, I noticed particularly high `null_threshold` values across cell lines. Specifically:
| | plate_map_name | null_threshold | fraction_strong | Metadata_cell_line
|…
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The `len` function when called with a Document as it's argument should return the total number of objects contained in a Document. However, it currently returns 0:
```
>>> doc = Document()
>>> doc…
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I am working towards processing all Drug Repurposing data and adding the results in this repository. The cell health project (https://github.com/broadinstitute/cell-health) now requires that the data …
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/Carldeboer/MAUDE
Confirm the following by editing…
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Thank you for your wonderful packages.
I use flow cytometry in the non-classical way, to analyse ratiometric experimental quantities, rather than count the proportion of of different populations wi…
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I am running the pipeline in parallel and I am getting a failure on `encode_task_xcor.py` with the error below. What might be the problem?
```
Traceback (most recent call last):
File "/home/ckibe…
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Hi
I installed CRISPRCasFinder in my mac and run
perl ./../CRISPRCasFinder.pl -in ../../hybrid_assembly/assembly_fasta\&gfa/hybrid_fasta/Yol001.fasta -cas -cf CasFinder-2.0.2 -def G -keep local…
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Is there any way to integrate CRISPRi data to Seurat clustering or have to do similar as discussed in #1435 ?
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The Hart lab (creators of BAGEL and PICKLES software) also recently published DrugZ, a new algorithm to perform data analysis on CRISPR screens.
--See the links below for more details.
(1) GitHub pa…
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Hi there,
I got the following error when running genapi and I am not sure how to solve it:
(genapi) Pablos-MacBook-Air:genapitest pablov$ genapi -n test
sed: 1: "/##FASTA/Q": invalid command …