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dcouvin
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CRISPRCasFinder
A Perl script allowing to identify CRISPR arrays and associated Cas proteins from DNA sequences
https://crisprcas.i2bc.paris-saclay.fr
GNU General Public License v3.0
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Error when result folder is not in source folder
#55
Nesper94
opened
2 months ago
0
a particular set of parameters for CCF fails to produce results for all genomes we tried
#54
azat-badretdin
opened
4 months ago
3
json output sometimes "forgets" closing ] in "Cas": [] line
#53
azat-badretdin
opened
7 months ago
0
Could not open output GFF in result/result2/ because No such file or directory
#52
qkqk-hub
opened
9 months ago
0
[FEATURE REQUEST] macsyfinder models custom dir
#51
jowodo
opened
1 year ago
0
CRISPRCasFinder.pl did not report any errors but produced three unknown core files
#50
HZAU-YAYA
closed
1 year ago
2
No CRISPR/CAS detection on fasta files with more than 100 contigs
#49
shreya1singh728
opened
1 year ago
1
The result of CRISPR-Cas_summary.tsv don't have Cas Types/Subtypes
#48
WoCer2019
opened
1 year ago
1
error in using crisprcasfinder with subprocess, snakemake and Rscript
#47
mf116
opened
1 year ago
10
How to use CRISPRCasFinder through singularity container
#46
WoCer2019
closed
1 year ago
4
Error in `muscle': double free or corruption (out): 0x00007ffceb581bf0
#45
Wendy361
opened
1 year ago
12
MSG: No file or directory called
#44
TKsh6
opened
1 year ago
1
Flank sequence near contig edge has negative coordinate
#43
tgurbich
closed
1 year ago
1
Dependency issues using Singularity image
#42
nh2740
closed
1 year ago
1
Installation of Date::Calc failed
#41
JavierFFavieres
closed
1 year ago
3
Recent Singularity container is not recognized by Singularity versions <2.6.1
#40
jcv888
opened
2 years ago
1
CRISPERCasFinder does not handle vmatch results with multi line sequence correctly
#39
EricDeveaud
opened
2 years ago
2
Too many intermediate files
#38
clb21565
opened
2 years ago
2
Using new version of MacSyFinder on CRISPRCasFinder.pl
#37
mhyleung
opened
2 years ago
7
CRISPRCasFinder.pl: command not found
#36
Nikitakurilov
opened
2 years ago
5
Singularity: Device or resource busy // FAIL TO BUILD
#35
jowodo
opened
2 years ago
1
Multi-threads options
#34
Chiongchih
closed
2 years ago
1
MacSyFinder link outdated
#33
oseias-r-junior
closed
2 years ago
3
IF I don't have sudo?
#32
zckoo007
opened
3 years ago
9
can't find the shared object file (./sel392v2.so)
#31
wanjinhu
opened
3 years ago
3
vmatch2
#30
drob2727
closed
3 years ago
3
Singularity image unable to find local files
#29
chahatupreti
closed
3 years ago
5
Different results for CasFinder in online and local runs
#28
chahatupreti
closed
3 years ago
5
Getting multiple CAS types for a single CRISPR array
#27
annagaines
closed
3 years ago
1
mixed up results when launching on multiple files in parallele
#26
letQOD
opened
3 years ago
1
A question when doing test
#25
durubing-jn
closed
3 years ago
1
Errors when using --faa and --gff options
#24
jvera888
opened
3 years ago
4
"index files are missing" error when running test command
#23
robinengler
closed
3 years ago
3
Discrepancy between Direct Repeat sequences
#22
chahatupreti
closed
4 years ago
4
perl module issues
#21
tushar-ahmed
closed
3 years ago
13
avoid write-protected directories
#20
erelior
closed
4 years ago
0
Is there a way to simply get a list of spacers?
#19
chahatupreti
closed
4 years ago
5
Date::Calc perl module not located
#18
tushar-ahmed
closed
4 years ago
1
trouble with multifasta.fna
#17
ykm7788
closed
4 years ago
1
run command locally and submission to website generate different results.
#16
limin321
closed
4 years ago
17
BioConda package
#15
oschwengers
opened
4 years ago
1
Permission issues while running the Singularity container
#14
JSHuisman
opened
4 years ago
4
Added the missing Bio::AlignIO module
#13
mbeuvin
closed
4 years ago
0
General Search not working
#12
rkruegs123
closed
5 years ago
6
Singularity image not capable of being pulled
#11
gavinkurgan
closed
3 years ago
2
Use getopt to parse CLI options
#10
duboism
closed
5 years ago
1
Clean code dependencies
#9
mbeuvin
closed
5 years ago
0
Use non-zero exit codes in case of error
#8
mbeuvin
closed
5 years ago
2
Can you please release the version 4.2.19 ?
#7
linnabrown
closed
5 years ago
1
munmap_chunk Error
#6
irazoquimatias
opened
5 years ago
1
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