dcouvin CRISPRCasFinder issues

dcouvin / CRISPRCasFinder

A Perl script allowing to identify CRISPR arrays and associated Cas proteins from DNA sequences

https://crisprcas.i2bc.paris-saclay.fr

GNU General Public License v3.0

80 stars 28 forks source link

issues

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Error when result folder is not in source folder

#55 Nesper94 opened 2 months ago
0
a particular set of parameters for CCF fails to produce results for all genomes we tried

#54 azat-badretdin opened 4 months ago
3
json output sometimes "forgets" closing ] in "Cas": [] line

#53 azat-badretdin opened 7 months ago
0
Could not open output GFF in result/result2/ because No such file or directory

#52 qkqk-hub opened 9 months ago
0
[FEATURE REQUEST] macsyfinder models custom dir

#51 jowodo opened 1 year ago
0
CRISPRCasFinder.pl did not report any errors but produced three unknown core files

#50 HZAU-YAYA closed 1 year ago
2
No CRISPR/CAS detection on fasta files with more than 100 contigs

#49 shreya1singh728 opened 1 year ago
1
The result of CRISPR-Cas_summary.tsv don't have Cas Types/Subtypes

#48 WoCer2019 opened 1 year ago
1
error in using crisprcasfinder with subprocess, snakemake and Rscript

#47 mf116 opened 1 year ago
10
How to use CRISPRCasFinder through singularity container

#46 WoCer2019 closed 1 year ago
4
Error in `muscle': double free or corruption (out): 0x00007ffceb581bf0

#45 Wendy361 opened 1 year ago
12
MSG: No file or directory called

#44 TKsh6 opened 1 year ago
1
Flank sequence near contig edge has negative coordinate

#43 tgurbich closed 1 year ago
1
Dependency issues using Singularity image

#42 nh2740 closed 1 year ago
1
Installation of Date::Calc failed

#41 JavierFFavieres closed 1 year ago
3
Recent Singularity container is not recognized by Singularity versions <2.6.1

#40 jcv888 opened 2 years ago
1
CRISPERCasFinder does not handle vmatch results with multi line sequence correctly

#39 EricDeveaud opened 2 years ago
2
Too many intermediate files

#38 clb21565 opened 2 years ago
2
Using new version of MacSyFinder on CRISPRCasFinder.pl

#37 mhyleung opened 2 years ago
7
CRISPRCasFinder.pl: command not found

#36 Nikitakurilov opened 2 years ago
5
Singularity: Device or resource busy // FAIL TO BUILD

#35 jowodo opened 2 years ago
1
Multi-threads options

#34 Chiongchih closed 2 years ago
1
MacSyFinder link outdated

#33 oseias-r-junior closed 2 years ago
3
IF I don't have sudo?

#32 zckoo007 opened 3 years ago
9
can't find the shared object file (./sel392v2.so)

#31 wanjinhu opened 3 years ago
3
vmatch2

#30 drob2727 closed 3 years ago
3
Singularity image unable to find local files

#29 chahatupreti closed 3 years ago
5
Different results for CasFinder in online and local runs

#28 chahatupreti closed 3 years ago
5
Getting multiple CAS types for a single CRISPR array

#27 annagaines closed 3 years ago
1
mixed up results when launching on multiple files in parallele

#26 letQOD opened 3 years ago
1
A question when doing test

#25 durubing-jn closed 3 years ago
1
Errors when using --faa and --gff options

#24 jvera888 opened 3 years ago
4
"index files are missing" error when running test command

#23 robinengler closed 3 years ago
3
Discrepancy between Direct Repeat sequences

#22 chahatupreti closed 4 years ago
4
perl module issues

#21 tushar-ahmed closed 3 years ago
13
avoid write-protected directories

#20 erelior closed 4 years ago
0
Is there a way to simply get a list of spacers?

#19 chahatupreti closed 4 years ago
5
Date::Calc perl module not located

#18 tushar-ahmed closed 4 years ago
1
trouble with multifasta.fna

#17 ykm7788 closed 4 years ago
1
run command locally and submission to website generate different results.

#16 limin321 closed 4 years ago
17
BioConda package

#15 oschwengers opened 4 years ago
1
Permission issues while running the Singularity container

#14 JSHuisman opened 4 years ago
4
Added the missing Bio::AlignIO module

#13 mbeuvin closed 4 years ago
0
General Search not working

#12 rkruegs123 closed 5 years ago
6
Singularity image not capable of being pulled

#11 gavinkurgan closed 3 years ago
2
Use getopt to parse CLI options

#10 duboism closed 5 years ago
1
Clean code dependencies

#9 mbeuvin closed 5 years ago
0
Use non-zero exit codes in case of error

#8 mbeuvin closed 5 years ago
2
Can you please release the version 4.2.19 ?

#7 linnabrown closed 5 years ago
1
munmap_chunk Error

#6 irazoquimatias opened 5 years ago
1