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It seems the martinze2 cannot recognize the DNA.
The error is
WARNING - unknown-residue - Can't add bonds based on atom names for residue A-DT1 because 'Residue DT is not known to force field charm…
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```
Added a sub project related to file loading.
It uses a different method of loading files than bParse.
Instead of recursively testing file to memory structures for
differences it builds an offset…
-
```
Added a sub project related to file loading.
It uses a different method of loading files than bParse.
Instead of recursively testing file to memory structures for
differences it builds an offset…
-
```
Added a sub project related to file loading.
It uses a different method of loading files than bParse.
Instead of recursively testing file to memory structures for
differences it builds an offset…
-
# Background
The JnJ team requested using [Mafft](https://mafft.cbrc.jp/alignment/server/index.html) for DNA/RNA sequence alignment.
# Scope of work
* Implement running MSA via Mafft
* Add UI to…
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Hi, thanks for your amazing work
I wanted to ask about sharing the training code and data?
for RNA/DNA data all of the thing I see in repo are sequences. could you please share pdb files
Than…
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Hi! I'm new to this and I have no idea what is wrong. GeneMarkES/ST is an application in my university's HPC system, so I did not download the GeneMarkES program on my own computer (my genome files ar…
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Hi,
#I used old version (2.2.5) for mapping, and I got around 90% overall alignment rate. However, when I used new version, I could only get overall alignment rate less than 0.1%. I used the same …
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I wonder if someone may already have dealt with this, so that we can pick up at the point of least rework:
Is there any MultiQC code to parse the results of DNA/RNA Bioanalyzer runs? Which files w…
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We set up a sequenceserver app for public and usually the /tmp dir would ran out of disk storage because of long DNA query sizes resulting in large temporary files.
Therefore two configs are neede…