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Thanks for such a great repo! I get the following issue when running the model (but only when I use GPUs). I'm using torch checkpointing, not deepspeed. I saw an issue similar to this, but it seemed t…
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Latest version's installation fails when trying to also install FlashAttention:
```
(...)
Attempting to install FlashAttention
Looking in indexes: https://pypi.org/simple, https://pypi.ngc.nvidi…
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First of all, great work!
As you know for each protein Sequence Evolutionary Scale Modeling(ESM) generates an embedding in the size of #aminoacids*1280, I was wondering if we could get such informa…
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Here, original evoformer should be first `MSA-attention` then `Pairwise-Attention`:
https://github.com/lucidrains/alphafold2/blob/2c574801bab437b25018c2591fbc06fe17dee06c/alphafold2_pytorch/alphafold…
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Running command for oligotetramer sequence
```
python3 docker/run_docker.py --fasta_paths=input.fas --max_template_date=2022-05-14 --data_dir=parameter/ --model_preset=multimer
```
crashes…
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I keep getting the following error when running alphafold. I have tried updating the Dockerfile according to Issue #306 but it does not seem to be working. Also I have updated to cuda11.1 but it conti…
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## Error
[Line 68](https://github.com/deepmind/alphafold/blob/be37a41d6f83e4145bd4912cbe8bf6a24af80c29/docker/Dockerfile#L68) of `docker/Dockerfile` has the requirement for `jaxlib==1.6.9` but this…
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Hello everyone,
When I try to run the run_docker command, I get the following error message:
```
I1213 13:01:26.560190 140646328219456 run_docker.py:222] I1213 05:01:26.559695 139938476273856 m…
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## General Information
- ConKit version: 0.12.0
- Python version: 3.6.9
- Environment (if applicable): WSL
## Example
A minimal example to reproduce the error:
```
../.local/bin/conki…