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Hi there,
I'm not sure how to interpret lines in the gene presence/absence tables with gene names separated by "~~~".
For example:
```
fruB~~~fruB_3~~~fruB_1~~~fruB_2 fruB;fruB_3;fruB_1;fruB…
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I am facing another issue with few genes in `getParalogs` function:
Code:
```
library(drugTargetInteractions)
genes
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I created some files with lists of gene products and gene names:
Table 1.
https://docs.google.com/spreadsheets/d/11i1s-mVk-GxxOFuN0MEunz9Zcb970bNap-yUZ9Jz4ew/edit?usp=sharing
japonicus_expand…
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Hello,
My understanding is that panaroo must be run at a species level. I am interested in running fastGEAR which takes input from tools such as panaroo and roary and has the ability to detect inte…
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Hi,
Thank you for making HyPhy available.
I want to study selection on a gene and clade. After a certain node, there are gene duplications and losses along the gene tree, resulting in some taxa …
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Dear rnaQUAST developers,
I got the following error logs from rnaquast:
https://gist.github.com/bernt-matthias/2f6f39beea442aad7f9141093f8a44bb
Do you have any advice how I could find out wha…
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Hi,
I am trying to get the following code working, this is taken from the manual: https://www.bioconductor.org/packages/devel/bioc/vignettes/drugTargetInteractions/inst/doc/drugTargetInteractions.h…
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GO:0005671 | Ada2/Gcn5/Ada3 transcription activator complex
A multiprotein complex that possesses histone acetyltransferase and is involved in regulation of transcription. Contains either GCN5 or PC…
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I decided to go ahead and add the cerevisiae orthologs from Compara. It's easy to edit or remove them later.
Here is the file: https://github.com/japonicusdb/japonicus-curation/blob/main/cerevisi…
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Dear all:
today, I try to use ls-bsr to perform several bacterial genomes. however, the error occurs, can someone help me? thank you very much!
the following error information:
python ~/bios…
yzhzu updated
3 years ago