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In this case the noisy footers are wrongly captured in the DAs.
```xml
DATA AVAILABILITY
The genome assembly was uploaded to NCBI Genba…
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Hi, Felix.
I'm so sorry to bother you again. I have WGBS data from the same batch for two species (Accel Swift data) and have already trimmed it using the method you suggested, with the following c…
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Hello Team!
I built a reusable sub workflow for performing BUSCO on genome alone, or on genome and annotation. I have used it in two other pipelines. It is currently sitting in my own modules repo: …
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Dear authors,
Thanks very much for your tool. In your paper, you use very comprehensive metrics to evaluate the methods. For example genome recall, genome precision, binned singletons,...., can yo…
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**Describe the bug**
--cpus option in HybridModel.py seems not work
**To Reproduce**
```
singularity run /public2/home/sl_qybio/sl_qybio/software/biosoft/HelixerDocker/helixer.sif HybridModel.py…
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Dear team,
Just wonder how I can use this tools for bacterial genomes since bacterial genomes are completely different, model should also be very different.
Thanks,
Jianshu
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Hello,
I'm having trouble downloading the cache for the `ARS-UCD1.3` reference genome in Bos Taurus:
```
$ vep_install -s bos_taurus --NO_HTSLIB -a c -c /home/ubuntu/vep --NO_UPDATE --CACHE_VER…
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Dear Dr. Zhou and colleagues:
**Can we use GEMMA to run a GWAS on UK Biobank data**?
I understand that I shall run each chromosome separately.
But still, if GEMMA only takes plink bed/bim/fam…
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I have assembled a single haplotype and aligned it to the hg38 reference genome. Then, I used SVision to call structural variants (SVs). When I called SVs using each haplotype separately, both haploty…
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> *[Filament](https://en.wikipedia.org/wiki/Galaxy_filament)* – A large-scale structure in the universe, consisting of a network of galaxies and galaxy clusters interconnected by dark matter and gas. …