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nf-core
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genomeqc
Compare the quality of multiple genomes, along with their annotations.
https://nf-co.re/genomeqc
MIT License
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Pipeline fails when running on input_myco_tiny.csv dataset.
#55
FernandoDuarteF
opened
2 hours ago
1
Check linting
#54
FernandoDuarteF
opened
5 hours ago
0
First PR on nf-core
#53
chriswyatt1
opened
5 hours ago
0
Remove unused bin scripts (from excon)
#52
chriswyatt1
closed
8 hours ago
1
Create tube map
#51
FernandoDuarteF
opened
1 day ago
0
Logic for variable input types
#50
chriswyatt1
opened
1 day ago
2
Add a tree building method for genome only
#49
chriswyatt1
opened
1 day ago
0
Add nf-test
#48
chriswyatt1
opened
1 day ago
0
new plots organisation
#47
chriswyatt1
closed
1 day ago
1
Add ability to turn off specific modules
#46
chriswyatt1
opened
1 day ago
1
Modules and tools ideas
#45
FernandoDuarteF
opened
1 day ago
0
Test genome only download runs from NCBI DOWNLOAD
#44
chriswyatt1
opened
1 day ago
0
Add `Lai` to genome only mode
#43
chriswyatt1
opened
2 days ago
1
Add `merqury` to pipeline
#42
chriswyatt1
opened
2 days ago
0
Add NCBI FCS GX module
#41
FernandoDuarteF
opened
2 days ago
0
Add new module `HITE`
#40
chriswyatt1
opened
2 days ago
0
Add MultiQC compatible modules to correct channel
#39
chriswyatt1
opened
2 days ago
0
BUSCO runs on longest isoforms
#38
FernandoDuarteF
opened
2 days ago
0
BUSCO fails
#37
FernandoDuarteF
opened
2 days ago
2
A basic working tree plot and busco module
#36
chriswyatt1
closed
2 days ago
0
Redundant info
#35
chriswyatt1
closed
2 days ago
1
Gitpod config doesn't work
#34
chriswyatt1
opened
3 days ago
0
Quast doesn't cache every time
#33
chriswyatt1
opened
3 days ago
0
Added local subworkflows
#32
FernandoDuarteF
closed
1 day ago
1
Add AGAT spstatistics and QUAST modules
#31
FernandoDuarteF
closed
3 days ago
1
Add busco on chromosome plot
#30
chriswyatt1
opened
4 days ago
0
Genome only mode
#29
chriswyatt1
opened
4 days ago
1
WIP Treefigure
#28
chriswyatt1
closed
4 days ago
0
Add modules version to workflow
#27
FernandoDuarteF
opened
1 week ago
0
Added AGAT spstatistics and Quast modules
#26
FernandoDuarteF
closed
4 days ago
0
Add options to modules.config file
#25
FernandoDuarteF
opened
1 week ago
0
Update test_full.config
#24
chriswyatt1
closed
1 week ago
0
Added TIDK subworkflow
#23
FernandoDuarteF
closed
1 week ago
2
Add TIDK subworkflow
#22
FernandoDuarteF
closed
1 week ago
1
unknown recognition error type
#21
FernandoDuarteF
opened
1 week ago
1
Longest isoform and GFFREAD
#20
FernandoDuarteF
closed
1 week ago
0
TIDK subworkflow
#19
chriswyatt1
closed
1 week ago
0
GFFREAD does not work with compressed files
#18
FernandoDuarteF
closed
1 week ago
1
Add subworkflows
#17
FernandoDuarteF
closed
4 days ago
3
Plot for the phylogenetic tree plus stats (e.g. BUSCO)
#16
chriswyatt1
closed
1 day ago
1
Add GFFREAD module
#15
FernandoDuarteF
closed
1 week ago
2
Add agat_sp_keep_longest_isoform.pl as local module
#14
FernandoDuarteF
closed
1 week ago
2
Orthofinder
#13
FernandoDuarteF
closed
1 week ago
0
Problems with Orthofinder module
#12
FernandoDuarteF
closed
1 week ago
1
Add Orthofinder module
#11
FernandoDuarteF
closed
1 week ago
1
Busco
#10
FernandoDuarteF
closed
2 weeks ago
0
Add BUSCO module
#9
FernandoDuarteF
closed
2 weeks ago
2
Validate input samplesheet
#8
FernandoDuarteF
opened
3 weeks ago
3
Runs ncbigenome download
#7
FernandoDuarteF
closed
2 weeks ago
0
Add test data
#6
chriswyatt1
closed
1 week ago
3
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