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nf-core
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genomeqc
Compare the quality of multiple genomes, along with their annotations.
https://nf-co.re/genomeqc
MIT License
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8
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Test genome only download runs from NCBI DOWNLOAD
#44
chriswyatt1
opened
1 month ago
0
Add `Lai` to genome only mode
#43
chriswyatt1
opened
1 month ago
1
Add `merqury` to pipeline
#42
chriswyatt1
closed
3 weeks ago
3
Add NCBI FCS GX module
#41
FernandoDuarteF
opened
1 month ago
1
Add new module `HITE`
#40
chriswyatt1
opened
1 month ago
2
Add MultiQC compatible modules to correct channel
#39
chriswyatt1
closed
3 weeks ago
0
BUSCO runs on longest isoforms
#38
FernandoDuarteF
closed
1 week ago
1
BUSCO fails
#37
FernandoDuarteF
opened
1 month ago
4
A basic working tree plot and busco module
#36
chriswyatt1
closed
1 month ago
0
Redundant info
#35
chriswyatt1
closed
1 month ago
1
Gitpod config doesn't work
#34
chriswyatt1
opened
1 month ago
0
Quast doesn't cache every time
#33
chriswyatt1
closed
2 weeks ago
2
Added local subworkflows
#32
FernandoDuarteF
closed
1 month ago
1
Add AGAT spstatistics and QUAST modules
#31
FernandoDuarteF
closed
1 month ago
1
Add busco on chromosome plot
#30
chriswyatt1
closed
2 weeks ago
1
Genome only mode
#29
chriswyatt1
closed
4 weeks ago
1
WIP Treefigure
#28
chriswyatt1
closed
1 month ago
0
Add modules version to workflow
#27
FernandoDuarteF
opened
1 month ago
0
Added AGAT spstatistics and Quast modules
#26
FernandoDuarteF
closed
1 month ago
0
Add options to modules.config file
#25
FernandoDuarteF
opened
1 month ago
0
Update test_full.config
#24
chriswyatt1
closed
1 month ago
0
Added TIDK subworkflow
#23
FernandoDuarteF
closed
1 month ago
2
Add TIDK subworkflow
#22
FernandoDuarteF
closed
1 month ago
1
unknown recognition error type
#21
FernandoDuarteF
opened
1 month ago
1
Longest isoform and GFFREAD
#20
FernandoDuarteF
closed
1 month ago
0
TIDK subworkflow
#19
chriswyatt1
closed
1 month ago
0
GFFREAD does not work with compressed files
#18
FernandoDuarteF
closed
1 month ago
1
Add subworkflows
#17
FernandoDuarteF
closed
1 month ago
3
Plot for the phylogenetic tree plus stats (e.g. BUSCO)
#16
chriswyatt1
closed
1 month ago
1
Add GFFREAD module
#15
FernandoDuarteF
closed
1 month ago
2
Add agat_sp_keep_longest_isoform.pl as local module
#14
FernandoDuarteF
closed
1 month ago
2
Orthofinder
#13
FernandoDuarteF
closed
1 month ago
0
Problems with Orthofinder module
#12
FernandoDuarteF
closed
1 month ago
1
Add Orthofinder module
#11
FernandoDuarteF
closed
1 month ago
1
Busco
#10
FernandoDuarteF
closed
1 month ago
0
Add BUSCO module
#9
FernandoDuarteF
closed
1 month ago
2
Validate input samplesheet
#8
FernandoDuarteF
opened
1 month ago
3
Runs ncbigenome download
#7
FernandoDuarteF
closed
1 month ago
0
Add test data
#6
chriswyatt1
closed
1 month ago
3
Add input validation functions to main workflow
#5
FernandoDuarteF
closed
1 month ago
1
Branched channels can't be emitted
#4
FernandoDuarteF
opened
1 month ago
0
Add all the modules
#3
FernandoDuarteF
closed
1 month ago
2
Add ncbigenomedownload module
#2
FernandoDuarteF
closed
1 month ago
1
Update README.md
#1
chriswyatt1
closed
1 month ago
0
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