AnantharamanLab vRhyme issues

AnantharamanLab / vRhyme

Binning Virus Genomes from Metagenomes

GNU General Public License v3.0

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issues

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No bins created-- did we do something wrong or are there really no bins?

#37 rikander opened 1 month ago
5
Can you provide the code for evaluating the performance?

#36 jiaojiaoguan opened 1 month ago
1
vRhyme error code

#35 kangeun-kim opened 4 months ago
1
p

#34 clementcoclet opened 7 months ago
0
Error. No file(s) for coverage information were identified. Check coverage inputs (c/b/s/r/u/v). Exiting.

#33 metapanpanwang opened 8 months ago
2
Error after Performing machine learning classification

#32 Aciole-David opened 8 months ago
2
One merged fa can't not map to 63 individual bam file

#31 Rhettbest opened 8 months ago
2
Scikit-learn version issue ```ValueError: node array from the pickle has an incompatible dtype```

#30 erfanshekarriz closed 10 months ago
1
Dereplication. Question.

#29 SergeyBaikal opened 11 months ago
0
No bins generated, bug or feature?

#28 Joon-Klaps opened 11 months ago
2
[Question] Is this for binning contigs from the same viral genome or clustering viral genomes?

#27 jolespin opened 1 year ago
3
Error. No file(s) for coverage information were identified. Check coverage inputs (c/b/s/r/u/v). Exiting.

#26 haleyhallowell opened 1 year ago
3
question about using vRhyme

#25 liucong2016 opened 1 year ago
1
i made a mistake. i have no idea with it. need some help

#24 liucong2016 opened 1 year ago
12
vRhyme 'incompatible dtype' in modules

#23 cam315 closed 1 year ago
2
How to prepare coverage_values.tsv file?

#22 WoCer2019 opened 1 year ago
1
Program trying to read from non-existing output file

#21 minna-miha opened 1 year ago
6
I encountered an error using the script `coverage_table_convert.py`

#20 rdenise opened 1 year ago
1
High number of bacterial genes in vRhyme bins

#19 ShailNair opened 1 year ago
6
Assessing the quality of vMAGs

#18 quliping closed 2 years ago
0
Training DATA AVAILABILITY

#17 Nianzhen-GU opened 2 years ago
0
performing taxonomy classifications on vrhyme bins

#16 AJWing opened 2 years ago
1
How to know which viral sequences are not used in binning?

#15 AJWing opened 2 years ago
4
Issue on the clustering algorithm

#14 dyxstat opened 2 years ago
1
Suitability for binning Eukaryotic viral sequences derived from SAGs

#13 felipehcoutinho closed 2 years ago
2
vRhyme_nucmer_delta_parsed.tsv not found

#12 XiongGZ opened 2 years ago
2
Bare minimum input

#11 AJWing closed 2 years ago
2
Regarding dereplication of bins

#10 ShailNair opened 2 years ago
4
Release versions format

#9 jayramr closed 2 years ago
4
Question about the vRhyme paper

#8 Nianzhen-GU closed 2 years ago
2
How to concatenate the contigs of vMAGs into a single sequence

#7 mijiandui closed 2 years ago
0
input file if relative path seems don't work well

#6 zpinocchio opened 2 years ago
1
Interpretation of results

#5 michoug opened 2 years ago
3
checkV

#4 ntromas opened 2 years ago
5
"ET model: Not found"

#3 KrisKieft opened 2 years ago
0
No such file or directory vRhyme_nucmer_delta_parsed.tsv

#2 JSSaini closed 2 years ago
14
input fasta file

#1 slambrechts opened 2 years ago
5