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Hi there,
How should I deal with missing data in summary statistics for example A2 column is not available.
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I just got this running
Note that:
- ABF does not get to if proportion_cases is missinng
- polyfun_susie is missing the environment.
## Code
```
columnsnames = echodata::construct_colmap(m…
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Getting the following error. Any help would be appreciated! Thanks.
-------------------------------
Call:
./munge_sumstats.py \
--out outfile\
--merge-alleles w_hm3.snplist \
--N 4810.0 \
--s…
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Hi,
I got some error messages when the mtag analysis were all most finished. How can I fix it? Could you help me ? Thank you.
"
2020/11/10/03:17:41 PM ... Completed MTAG calculations.
2020/11/1…
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Also encountered "The estimated prior variance is unreasonably large" using ieugwasr ld_matrix_local function to calculate the ld matrix. As I have checked the original code of _ld_matrix_local_ func…
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Hi,
I am using LDSC to calculate h2 for a quantitative trait in a European sample. I have performed a meta-analysis with a total sample size of 4740 cases. I obtain a negative h2 (-0.0796), a small…
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hi, thank you for your wonderful method!
i have problems when using MR-JTI to interpret my GWAS results.
problem 1:
do i need to run JTI methd before runing MR-JTI?
if not, how can i get the e…
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Hi,
Could you please help me with this error:
2021/09/07/02:25:24 PM Reading sumstats from provided DataFrame into memory 10000000 SNPs at a time.
2021/09/07/02:26:25 PM Read 9804743 SNPs from …
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Hi Kai,
thanks for your tool on cross-ancestry fine-mapping!
Currently I'm trying to do cross-ancestry fine-mapping for two ancestries and both GWASs are performed with the same set of covaria…
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Here is an updated example of a BCF file on bluecrystal4:
```
/mnt/storage/private/mrcieu/research/mr-eve/gwas-files/2/data.bcf
```
Ultimately we would like to have a report for all `gwas-file…