MRCIEU opengwas-reports issues

MRCIEU / opengwas-reports

Report module for IEU GWAS pipeline

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issues

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Verify effect allele by comparing effect allele frequency with population reference frequency

#28 explodecomputer opened 3 years ago
0
error message

#27 mcgml opened 4 years ago
3
infer standard deviation from the summary data

#26 explodecomputer opened 4 years ago
0
infer sample size from the summary data

#25 explodecomputer opened 4 years ago
0
error message

#24 mcgml opened 4 years ago
1
error running in docker container

#23 mcgml closed 4 years ago
3
Output flag leads to missing metadata files

#22 explodecomputer opened 4 years ago
0
processing QC metrics error

#21 mcgml opened 4 years ago
0
docker runtime error

#20 mcgml closed 4 years ago
2
add dbsnp identifier agreement between original and fixed build

#19 mcgml opened 4 years ago
0
Update to new vcf format

#18 explodecomputer opened 4 years ago
11
Update documentation for running on BC4

#17 mcgml opened 4 years ago
0
Current usage rule?

#16 YiLiu6240 closed 4 years ago
2
Wdl

#15 mcgml closed 5 years ago
0
skimr: tweak digits for numeric section

#14 YiLiu6240 opened 5 years ago
1
Fix NA_real_

#13 YiLiu6240 closed 5 years ago
0
error creating report in WDL workflow

#12 mcgml closed 5 years ago
3
sum of r2 statistics for QC report

#11 mightyphil2000 opened 5 years ago
0
Roadmap

#10 YiLiu6240 closed 4 years ago
0
Bgc merge

#9 explodecomputer closed 5 years ago
0
Consider interactive manhattan and/or qq plots

#8 explodecomputer closed 5 years ago
2
Incorporate info from LDSC and clumping

#7 explodecomputer closed 5 years ago
6
Deployment

#6 explodecomputer closed 5 years ago
6
Create Meta QC report

#5 mightyphil2000 closed 5 years ago
0
Discussion

#4 explodecomputer opened 5 years ago
12
Criteria for auto decision making

#3 YiLiu6240 opened 5 years ago
6
QC metrics

#2 YiLiu6240 opened 5 years ago
0
Instead of requiring metadata.json, just generate it from the bcf header

#1 explodecomputer closed 5 years ago
3