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I recently processed Hi-C data provided by a colleague of mine, who performed the alignment steps. I then used `hicBuildMatrix` in conjunction with `findRestSites` to produce a contact matrix with fra…
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Hi!
Thank you for developing a great suite of tools, and for the excellent documentation. If you have a moment, I have a question regarding editing one/two of your .py scripts.
I would like to t…
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I apologise if this is trivial, but I checked other entries with this kind of error and I did not find a solution.
I am attaching the file that triggered the error. It is true that there are some e…
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### Description of bug
IndexError: list index out of range
### File that triggers the error
```tsv
file percent reads taxon_id taxon_name
NGS_0397…
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Hi,
Thank you again for the update : ). I've been playing with the new version (3.4) and I noticed a few things...
first file: hicadjustmatrix --region (center regions of all chromosome) --action …
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I am trying to :
```
cooltools random-sample -c 228878289 -p 6 HiC_2-4h.5Kb-bin-matrix.transRemoved.cool HiC_2-4h.5Kb-bin-matrix.transRemoved.downsampled.cool
```
but I am getting:
```
Traceb…
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Hi,
I have a merged replicate .h5 matrix generated out of .bam files using diffhic.
I would like to use hicAggregate to look at the aggregate hiC signal at selected TAD-like domains.
How can I trou…
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## Check Documentation
I have checked the following places for your error:
- [X ] [nf-core website: troubleshooting](https://nf-co.re/usage/troubleshooting)
- [X ] [nf-core/hic pipeline doc…
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Following the [documentation](https://hicexplorer.readthedocs.io/en/latest/content/mES-HiC_analysis.html#mapping-the-raw-files), I map raw data using the standard `bwa` commands, like :
```
bwa mem …
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Hi,
I'd like to leftover a validPairs file from hg38 to hg19.
My input file looks like:
NS500488:301:H5MVMBGX2:2:13305:24468:17278 1 10174 + 22 50808109 - …