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Hello,
I am just using PPanGGOLiN for the first time and am encountering an error:
```
Traceback (most recent call last):
File "/home/matwan/anaconda3/envs/ppanggolin/bin/ppanggolin", line 10,…
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Thanks for writing `taxor` and including useful databases!
What the community (or maybe just me) really wants is a database that covers more of the microbial kingdom, but with the benefit of GTDB f…
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**_Are you seeing something that looks like a bug? Please attach as much information as possible._**
No. The job is killed because of memory limitations _e.g_ `/bin/bash: line 1: 172 Killed`
…
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Hi !
I have followed the **Minigraph-Cactus Pangenome Pipeline** to construct a graph-based pangenome and output the index using Giraffe. Additionally, I have used Giraffe to perform read mapping f…
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Hi,
I have a question on vg msga. There are many parameters to set with little documentation on what is best to use. I understand that this is a difficult topic, but I hope that someone with more vg …
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Hello,
I am trying to use Ptolemy extract (in addition to Panaroo for Bacterial Pangenome) but I have an error when I am running the following command on my gff3 file obtained with Bakta:
```
ja…
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Schematize should be running as a component inside of JBrowse2. This is a separate repository at https://github.com/graph-genome/jbrowse-components which should check out Schematize repo as a submodu…
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**Assignee:** Ali Haider Bangash
The first step is to identify what data could be integrated through a knowledge graph and what is available. What did the other Hackathon teams accomplish? What is …
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Hi, when I run the command:
`perl "$Panoct_bin"/run_pangenome.pl --no_grid --blast_local --panoct_local --use_nuc --working_dir "$Panoct_out" --gb_dir "$Gbks" --panoct_verbose
`
The following p…
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@dentearl , @thiagogenez , @diekhans, @epaull and @benedictpaten,
I'm trying to build pangenome graph with MHC genomes from [Zenodo](https://zenodo.org/record/6617246#.ZC0OQ-xBxhE)
Command used …