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## Short description of the problem
1 major problem when dealing with AUGUSTUS gene calls(more details below)
## anvi'o version
```
Anvi'o .......................................: hope (v7)
…
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We need the ability to upload to a subdirectory recursively like so:
```
ssds staging upload \
--deployment default \
--submission-id 661e6bb2-04d3-4712-b6de-c42eeb8d63ba \
--name EMBL…
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## The need
`anvi-help` produces great info about resources. So do the anvi'o help docs. It would be nice if when `--help` is used in a command, the information in the `__resources__` variables was…
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We need a single page resource that lists all ways to get help for current and new anvi'o users of different levels.
We will likely see more and more of issues such as #743 , and if we want to help…
meren updated
3 years ago
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Hi all!
Today I installed ANVIO! I tried to make a pangenome from four MAGs. But unfortunately the last step did not work!
(This works very well anvi-self-test --suite pangenomics)
Any suggestion…
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Hi, Meren. Thanks for your programe. Following the tutorial of pangenomics, I got a summary *.txt. However, I found that some gene clusters usually correspongded to same COG id, such as the following …
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Hi all,
I ran the following command line:
$ anvi-display-pan -p Pangenome2021/Pangenome2021-PAN.db -g C-GENOMES.db -t tree-newick-gtdb
I got the following error
![image](https://user-images.git…
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Hey,
When I used remote CMD tool like ```xshell``` to use Anvi'o ```anvi-display-pan -p PROJECT-PAN.db -g PROJECT-PAN-GENOMES.db``` (http://merenlab.org/2016/11/08/pangenomics-v2/) on remote server…
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Hi,
I install PEPPER locally and run the command `pepper_snp make_images` `run_inference` and `find_candidates` step by step. In the second step `run_inference`, the program needs an input `mode…
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## Short description of the problem
Maybe bug? Maybe you know about it already and this is not useful to report? Feel free to ignore if so.
The "categorical" layer I used with --category-variabl…