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What I did to make preprocess running:
1. Fixed rosetta path in `constants.py` as you suggested.
2. Installed `mgltools_x86_64Linux2_1.5.6` which was mentioned there and fixed path to it.
3. Chan…
hcl14 updated
4 years ago
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Hi,
Thanks for the useful tool.
I am currently uncertain about the optimal type of transcriptome files to provide for my study. I am considering two approaches: directly using StringTie/Trinity fo…
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Is there a way to use pyensembl for some of the other genome databases built with ensembl's code? Examples are all the sites hosted under http://ensemblgenomes.org/:
- Ensembl Bacteria
- Ensembl Fung…
xguse updated
9 years ago
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Hi,
I'm looking at the and product of CAT, run only using TransMap and excluding the indel classification `r.extend(find_indels(tx, psl, aln_mode))`.
I'm now trying to build a table of orthologs…
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Hi! I am trying to generate molecules based on MTOR and MEK1 as written in the Github repo, but I am missing the `ligand_smiles.txt` for both protein, as stated in the `scoring_definition.csv`. Are bo…
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Hi
I ran the below command (had to fetch the pretrained model from the dMaSIF_colab repo) to test the site prediction accuracy and the ROC-AUC was on average of 0.62, not the 0.87 you state in the…
wjs20 updated
4 months ago
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How do we visually summarize a MSM?
- Naive: draw a network where the nodes are exemplars of each state and edges are transition rates, e.g.
![image](https://cloud.githubusercontent.com/assets/57590…
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Hi,
is there any way to implement renaming of uploaded data at a later point?
Swantje
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We should probably think about the order of the doc sections. I just looked at the headings in the Sidebar and I felt like the order is not always optimal. E.g. TOPP tools are explained after the TO…