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@qinchunyuan we have found multiple errors in the annotations of the current submissions, please check:
{row: 60, column: "characteristics[disease]"}: "osteosarcoma " contains trailing whitespace
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I tried going through the annotated datasets with [sdrf-pipelines](https://github.com/bigbio/sdrf-pipelines) validator. On some of them, it breaks with a traceback, and on others it shows error messag…
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Probably has something to do with the fact, that we parse the inputs from a file here.
Which get directly loaded into input "path"s to processes. And the paths are potentially even URIs.
I don't kno…
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Hi all:
We have discussed before in other topics this issue #267, #218 but never as the central point of the discussion. I have presented today the format to HUPO-PSI, and one suggestion is to mak…
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I think we should give an example of how fractions of the same biological sample are grouped.
Ideally in the context of multiplexed data as this is kind of the most complex example.
Also MSstats e.g…
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Some information that can help the annotation.
- https://massive.ucsd.edu/ProteoSAFe/result.jsp?task=c8f8d31b313e44e682f7732a0b231726&view=display_metadata_results&file=f.RMSV000000298%2F2020-03-1…
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We need to update the CI/CD in order to be able to validate PRs that contains sdrf changes or additions.
A prototype of the CI/CD has been built in CircleCI but is not working properly. Related is…
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https://github.com/bigbio/proteomics-metadata-standard/blob/f183deb3bb224852e6b8e35fcb9a70cfb7757244/annotated-projects/PXD004683/sdrf.tsv
This experiment is wrong. In TMT experiment each sample sh…
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I see `Material Type` in many annotations but it is not specified anywhere in the standard description. Is it allowed, and if yes, why is it needed?
Material type sounds like a sample characteristi…
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When querying with a non-chacrateristics not-comment like `source`, the server fails.