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The `db_info.txt` file is read multiple times when running `metalign.py`:
https://github.com/nlapier2/Metalign/blob/8a7eba84ef7f62a40a28c3117967012a68a97bd0/select_db.py#L174
https://github.com/…
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Hello,
I assembled a genome with SPAdes --> checkM. CheckM showed it as Rhizobiales with 99.6% completeness. But ANI identified it as Altermonas.
I thought of trying RAPT in one go in local works…
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Thanks for writing `taxor` and including useful databases!
What the community (or maybe just me) really wants is a database that covers more of the microbial kingdom, but with the benefit of GTDB f…
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(Some months back I did this successfully to submit a new strain from a different genus, so while I might be doing something wrong/different, I suspect the ENA validator has become stricter in the mea…
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I have made a kraken2 database, and it works fine. However, when trying to build a bracken database from this I get a segmentation fault, and I believe it occurs in this line of kmer2reads_distr.cpp :…
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Dear friends, we got some trouble for MSA searching contain Taxonomy ID annotation.
## Expected Behavior
We want to search using mmseqs2 with uniref30_2103 database and colabfold_envdb_202108 dat…
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I've been taking a deep dive into eukaryotic metagenomics and EukCC seems like a great tool to have in the repertoire. From the documentation, it seems that EukCC version 2 is still in development so …
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Noticed this in v0.0.8, the final column of the ``kodoja_VRL.tsv`` output file is a taxid representing the combination of the Kraken and Kaiju assignment, but is shown as a float not an integer. i.e. …
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Hey,
I wanted to use fastDNA but I have an issue which block me.
I prepared `merged_training.fasta` file which contains many FASTA samples from NCBI. I also created `labels.txt` file with lables…
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Hi, I got the following error
Error in rule Plot_Authentication_Score:
jobid: 15
input: results/AUTHENTICATION/.30012ssL12c.collapsed_done
output: results/overview_heatmap_scores.pdf
…